Beast code in Giters

yz22015's starred repositories

The-Art-of-Linear-Algebra

Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"

Language:PostScriptCC0-1.015729 136 14

pywt

PyWavelets - Wavelet Transforms in Python

Language:PythonMIT1968 62 330

CEBRA

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

Language:PythonNOASSERTION862 37 30

CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Language:PythonGPL-2.0612 47 748

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

Language:PythonMIT457 25 1155

elastix

Official elastix repository

Language:C++Apache-2.0449 24 260

suite2p

cell detection in calcium imaging recordings

Language:Jupyter NotebookGPL-3.0333 17 886

pynapple

PYthon Neural Analysis Package :pineapple:

Language:PythonMIT243 11 161

obsidian-consistent-attachments-and-links

Obsidian plugin. Move note with attachments.

Language:TypeScriptMIT202 7 72

rastermap

a visualization method for neural data

Language:PythonGPL-3.0166 12 23

NoRMCorre

Matlab routines for online non-rigid motion correction of calcium imaging data

Language:MATLABGPL-2.0137 32 28

openai_tools

Growing collection of scripts to summarize the scientific literature using large-language models like ChatGPT.

Language:HTMLMIT112 7 3

NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.

Language:Jupyter NotebookGPL-3.0104 3 34

DeepCAD-RT

DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning

Language:Jupyter NotebookGPL-3.093 6 34

SUPPORT

Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.

Language:PythonGPL-3.065 6 15

pi2

C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.

Language:C++GPL-3.048 6 10

PSID

Preferential Subspace Identification Algorithm

Language:MATLABNOASSERTION43 7 2

Pinpoint

Multi-probe trajectory planning in an intuitive 3D environment

Language:C#GPL-3.041 2 565

NeuTu

Software package for neuron reconstruction and visualization

Language:C++NOASSERTION38 15 226

napari-nD-annotator

Language:PythonBSD-3-Clause28 4 43

SNUB

Language:PythonMIT23 4 26

zetapy

Python code implementing the ZETA-test

Language:PythonGPL-3.020 3 9

ZETA

Zenith of Event-based Time-locked Anomalies

Language:MATLABGPL-3.012 4 1

zetatest

Parameter-free statistical testing package

Language:MATLABGPL-3.09 3 7

track2p

Cell tracking for longitudinal calcium imaging recordings.

Language:PythonGPL-3.08 2 1

warpAnnotations

A tool to transform annotations (such as points, skeletons or meshes) between spatial datasets.

Language:MATLAB5 70

protocolBLAST

Sample preparation and warping accuracy for correlative multimodal imaging in the mouse olfactory bulb using two-photon, synchrotron X-ray and volume electron microscopy

Language:Jupyter Notebook2 30

XrayAssistedStaining

Code for analyzing the heavy metal accumulation during X-ray assisted staining

Language:MATLABGPL-3.01 10

BSD

Blind Sparse Deconvolution for calcium imaging.

Language:MATLABMIT100