Index error occurs when predicting.
yuto1352 opened this issue · comments
(menet_dev) [yumezu@triton practice2]$ MEnet predict -i test_data_bismark_bt2.deduplicated.bismark.cov.gz -m /home/yumezu/MEnet/weights/210910/best_model.pickle
____ __
/'\_/`\/\ _`\ /\ \__
/\ \ \ \L\_\ ___ __\ \ ,_\\
\ \ \__\ \ \ _\L /' _ `\ /'__`\ \ \/
\ \ \_/\ \ \ \L\ \/\ \/\ \/\ __/\ \ \_
\ \_\\ \_\ \____/\ \_\ \_\ \____\\ \__\\
\/_/ \/_/\/___/ \/_/\/_/\/____/ \/__/
MEnet version : 0.0.3_211010
Traceback (most recent call last):
File "/home/yumezu/anaconda3/envs/menet_dev/bin/MEnet", line 33, in <module>
sys.exit(load_entry_point('MEnet', 'console_scripts', 'MEnet')())
File "/home/yumezu/MEnet/MEnet/cli.py", line 79, in main
args.handler(args)
File "/home/yumezu/MEnet/MEnet/cli.py", line 21, in command_predict
predict(args)
File "/home/yumezu/MEnet/MEnet/predict.py", line 115, in predict
idx_regions, args.output_dir, args.bedtools)
File "/home/yumezu/MEnet/MEnet/predict.py", line 65, in read_input
df_input = df_input.reindex(idx_regions)
File "/home/yumezu/anaconda3/envs/menet_dev/lib/python3.7/site-packages/pandas/util/_decorators.py", line 312, in wrapper
return func(*args, **kwargs)
File "/home/yumezu/anaconda3/envs/menet_dev/lib/python3.7/site-packages/pandas/core/frame.py", line 4176, in reindex
return super().reindex(**kwargs)
File "/home/yumezu/anaconda3/envs/menet_dev/lib/python3.7/site-packages/pandas/core/generic.py", line 4812, in reindex
axes, level, limit, tolerance, method, fill_value, copy
File "/home/yumezu/anaconda3/envs/menet_dev/lib/python3.7/site-packages/pandas/core/frame.py", line 4023, in _reindex_axes
index, method, copy, level, fill_value, limit, tolerance
File "/home/yumezu/anaconda3/envs/menet_dev/lib/python3.7/site-packages/pandas/core/frame.py", line 4045, in _reindex_index
allow_dups=False,
File "/home/yumezu/anaconda3/envs/menet_dev/lib/python3.7/site-packages/pandas/core/generic.py", line 4883, in _reindex_with_indexers
copy=copy,
File "/home/yumezu/anaconda3/envs/menet_dev/lib/python3.7/site-packages/pandas/core/internals/managers.py", line 1301, in reindex_indexer
self.axes[axis]._can_reindex(indexer)
File "/home/yumezu/anaconda3/envs/menet_dev/lib/python3.7/site-packages/pandas/core/indexes/base.py", line 3476, in _can_reindex
raise ValueError("cannot reindex from a duplicate axis")
ValueError: cannot reindex from a duplicate axis