yuzhenpeng / HiCassembly

Pipeline using HiC data to help the genome assembly

HiCassembly

Nan Hu / Oct. 17, 2020

Pipeline using HiC in genome assembly

---

1. README.md This file.
2. 01-Flye+nextpolish.md Using Flye and nextpolish to assemble raw nanopore genome.
3. 02-juicer+3ddna.md Assemble genome using juicer and 3ddna packages.
4. allHiC.md Using allHiC packages to detect HiC signals and grouping contigs. (Currently not the best choice)
5. scripts All of the PBS submission scripts using under Linux.
6. miscellaneous Supplementary files in describing pipelines.