Yujing Zou's repositories
deep_cox_mixtures
Code for the paper "Deep Cox Mixtures for Survival Regression", Machine Learning for Healthcare Conference 2021
2D-VQ-AE-2
2D Vector-Quantized Auto-Encoder for compression of Whole-Slide Images in Histopathology
awesome-self-supervised-multimodal-learning
A curated list of self-supervised multimodal learning resources.
Bioformer_OG
Bioformer: an efficient BERT model for biomedical text mining
clinicalBERT
ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)
CRANE
Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
Folder-Structure-Conventions
Folder / directory structure options and naming conventions for software projects
genomic-scoring-breast-cancer-progression
Project in which we use image based chromatin(NMCO) features to identify abnormal cells in TMA
hi-ml
HI-ML toolbox for deep learning for medical imaging and Azure integration
HIPT
Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
HistCNN
A set of codes to classify H&E slides using deep learning
ImageBind
ImageBind One Embedding Space to Bind Them All
IMPRESS
Huang et.al. Artificial intelligence reveals features associated with breast cancer neoadjuvant chemotherapy responses from multi-stain histopathologic images
latent-diffusion
High-Resolution Image Synthesis with Latent Diffusion Models
MCAT
Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021
MedMNIST
18 MNIST-like Datasets for 2D and 3D Biomedical Image Classification: pip install medmnist
MeTra
This repository contains the code to our Paper: Medical Transformer for Multimodal Survival Prediction in Intensive Care - Integration of Image and Clinical Data
multisurv
Multimodal deep learning model for long-term cancer survival prediction
PathomicFusion
Fusing Histology and Genomics via Deep Learning - IEEE TMI
RepresentationLearning_SS2023
Representation Learning MSc course Summer Semester 2023
simsiam
PyTorch implementation of SimSiam https//arxiv.org/abs/2011.10566
transtab
NeurIPS'22 | TransTab: Learning Transferable Tabular Transformers Across Tables
uvadlc_notebooks
Repository of Jupyter notebook tutorials for teaching the Deep Learning Course at the University of Amsterdam (MSc AI), Fall 2022/Spring 2022