Haruka Ozaki's starred repositories
quicssh-rs
QUIC proxy that allows to use QUIC to connect to an SSH server without needing to patch the client or the server.
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
computer-science
:mortar_board: Path to a free self-taught education in Computer Science!
classifier-free-guidance-pytorch
Implementation of Classifier Free Guidance in Pytorch, with emphasis on text conditioning, and flexibility to include multiple text embedding models
scRNAseq_handson
PythonによるシングルセルRNA-seq解析。
awesome-chatgpt-prompts
This repo includes ChatGPT prompt curation to use ChatGPT better.
scMultiSim
A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
awesome-ai
A curated list of artificial intelligence resources (Courses, Tools, App, Open Source Project)
Cell_BLAST
A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
The-Art-of-Linear-Algebra
Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"
codable-model-optimizer
meta-heuristics solver for easy modeling
score_sde_pytorch
PyTorch implementation for Score-Based Generative Modeling through Stochastic Differential Equations (ICLR 2021, Oral)
minDiffusion
Self-contained, minimalistic implementation of diffusion models with Pytorch.
InstantNoodle
インスタントラーメン
patchworklib
Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.
dynamo-release
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
openproblems
Formalizing and benchmarking open problems in single-cell genomics
velocyto.R
RNA velocity estimation in R
phenotyping_made_easy
gui based image analysis platform in jupyter