Yan Shao's starred repositories
wf-bacterial-genomes
Small variant calling for haploid samples
latinbiota
Central repository with scripts and workflows for the analysis of the gut microbiome of the Latinbiota cohort
Polypolish
a short-read polishing tool for long-read assemblies
genome_updater
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
R-graph-gallery
A website that displays hundreds of R charts with their code
animalcules
R shiny app for interactive microbiome analysis
genomes-catalogue-pipeline
MGnify genome analysis pipeline
VirSorter2
customizable pipeline to identify viral sequences from (meta)genomic data