yang yanqing's repositories
annotated_deep_learning_paper_implementations
🧑🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
Pymol-script-repo
Collected scripts for Pymol
AwsomeCADD
好的CADD教程，资源总结
BEPb
Config files for my GitHub profile.
ColabFold
Making Protein folding accessible to all via Google Colab!
colvars
Collective variables module for molecular simulation and analysis programs
Deep_AMP
Generator and regressor neural networks for antimicrobial peptides
FAST
Fusion models for Atomic and molecular STructures (FAST)
mkanalysis
mk series: some biophysics MD/MC analysis scripts
mkrun
mk series: some biophysics MD build and run scripts
Molecular-Dynamics-Simulation
Sample codes for my book on molecular dynamics simulation
RFdiffusion
Code for running RFdiffusion
StandardMD-Amber
Tutorials for Standard MD with Amber
StandardMD-NAMD
Tutorials for Standard MD with NAMD
StandardMD-OpenMM
Tutorials for Standard MD with OpenMM
torchexplorer
Interactively inspect module inputs, outputs, parameters, and gradients.
transformerCPI2.0
Sequence-to-drug concept adds a perspective on drug design. It can serve as an alternative method to SBDD, particularly for proteins that do not yet have high-quality 3D structures available.
zjuthesis
Zhejiang University Graduation Thesis LaTeX Template