yottoo / MainPaths.jl

A julia package for main path analysis.

MainPaths

A package for computing main paths in the Julia programming language.

THIS PACKAGE IS IN AN EARLY STAGE AND MIGHT BREAK OR CHANGE WITHOUT WARNING

Installation

The package is currently not registered but can be added directly via the github package URL. From the julia REPL, type ] to enter the Pkg REPL and run:

pkg> add https://github.com/jfb-h/MainPaths.jl

julia> using MainPaths

Example

First, define an example graph:

julia> using Graphs, MainPaths

julia> A = [
 0  0  1  0  0  0  0  0  0  0  0
 0  0  1  1  0  0  0  0  0  0  0
 0  0  0  0  1  0  1  0  0  0  0
 0  0  0  0  0  1  0  0  0  1  1
 0  0  0  0  0  0  0  1  1  0  0
 0  0  0  0  0  0  0  0  1  1  0
 0  0  0  0  0  0  0  0  0  0  0
 0  0  0  0  0  0  0  0  0  0  0
 0  0  0  0  0  0  0  0  0  0  0
 0  0  0  0  0  0  0  0  0  0  0
 0  0  0  0  0  0  0  0  0  0  0
];

julia> g = SimpleDiGraph(A)
{11, 12} directed simple Int64 graph

Then, specify the main path weights and traversal algorithm and compute the main path:

julia> weight = SPCEdge(normalize=:none)
SPCEdge(:none)

julia> start = [1,2];

julia> traversal = ForwardLocal(start)
ForwardLocal{Int64}([1, 2])

julia> mainpath(g, weight, traversal)
MainPath with 9 vertices and 8 edges.

Literature

Batagelj (2003): Efficient Algorithms for Citation Networks. arXiv:cs/0309023