Joon Yoon's repositories
alphafold
Open source code for AlphaFold.
Language:PythonApache-2.0000
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Language:PythonMIT000
crt
transcriptome analysis scripts (historically clinical research transcriptome)
Language:HTML000
geo_submissions_guideline
Guidelines for geo submissions.
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Intro-to-ChIPseq
Intro to ChIPseq using HPC
Language:CSS000
ipenywis
Github Profile
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self_study_2021_2022
Self studies.
Language:Jupyter Notebook000
yoonsquared
Config files for my GitHub profile.
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Language:Jupyter Notebook000
knowledgebase
General knowledge for HBC computing
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rayshader
R Package for 2D and 3D mapping and data visualization
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Unlicense000
self_study_2023
Self study materials in 2023.
Language:Jupyter NotebookMIT000
shapemapper2
Public repository for ShapeMapper 2 releases
MIT000
Superfold
SuperFold is a pipeline that uses output data from ShapeMapper to model RNA secondary structures, including pseudoknots; identify de novo regions with well-defined and stable structures; and visualize most probable and alternative helices.
GPL-3.0000