Yong Wang's repositories
af2complex
Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
AlphaFold-StepByStep
Run AlphaFold-Multimer step by step
alphafold_non_docker
AlphaFold2 non-docker setup
bioicons
A library of free open source icons for science illustrations in biology and chemistry
BlenderSpike
A Blender add-on to bring animations from NEURON
CCMpred
Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
cg2at
Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)
evodock
A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
GREMLIN_CPP
GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
MOFF
Implementation of MOFF force field. Please cite us at Latham, A; Zhang, B BioRx, 2021. (https://www.biorxiv.org/content/10.1101/2021.01.06.425600v1.abstract)
molstar
A comprehensive macromolecular library
moltemplate
A general cross-platform tool for preparing simulations of molecules and complex molecular assemblies
open3spn2
An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
OPLSAAM
topology and parameter files for the OPLSAAM force field
oxdna_analysis_tools
A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
PyHDX
Derive ΔG for single residues from HDX-MS data
staeiou.github.io
Github pages
time-from-biased-simulations-tools
Simple tools for obtaining time from biased molecular dynamics simulations
vermouth-martinize
Describe and apply transformation on molecular structures and topologies
yongwangcph.github.io
WangICSB Lab website
yongwangCPHtest.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes