ylab-hi / BINARY

BIoiNformatics Algorithms libRarY aka BINARY

Home Page:https://binary.readthedocs.io/en/latest/

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Design Philosophy

cauliyang opened this issue · comments

Design Philosophy

Quick ideas about all I will do

Revise VcfReader

  • Add operator*, operator++ , operator !=, and return VcfRecord
  • Change VcfRecord as iterator VS Change VcfRecord as a Generator
  • Use sentinel as end_iterator
  • Change VcfReader's iterator tag to input_itrator
  • Support standard algorithm library
  • ⭐ Adopt C++20 standards to use concepts and support ranges operations
  • Add Error message when one vcf_reader has been consumed and call being() again

Build Interval Tree

  • Build a Interval Tree based on RB Tree
  • Move Shareptr
  • Adopt async to find overlaps concurrently
  • Using Google Benchmark to benchmark interval tree, brute force , method by index

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