yirenheihei

A-Deep-Learning-Model-for-Predicting-Next-Generation-Sequencing-Depth-from-DNA-Sequence

A Deep Learning Model for Predicting Next-Generation Sequencing Depth from DNA Sequence

Analysing-10X-ScRNA-data-Wang-et-al-2020-Nat-Commun-

I redo the ScRNA analysis in the paper of Wang et al 2020, Nat Comm. Here's my modified script for Helen He Zhu github (https://github.com/HelenHeZhu/StemCell)

asp_pan

Generating large pangenome for Aspergillus fumigatus

Awesome-Knowledge-Distillation

Awesome Knowledge-Distillation. 分类整理的知识蒸馏paper(2014-2021)。

bioinfokit

Bioinformatics data analysis and visualization toolkit

bioseq2vec

BioSeq2vec: learning deep representation of biological sequences using LSTM Encoder-Decoder

C-Plus-Plus

Collection of various algorithms in mathematics, machine learning, computer science and physics implemented in C++ for educational purposes.

crema

Classifying RNAs as lncRNAs by ensemble machine learning algorithms

cs224n

Stanford CS224n: Natural Language Processing with Deep Learning, Winter 2020

d2l-zh

《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被55个国家的300所大学用于教学。

deep-learning-v2-pytorch

Projects and exercises for the latest Deep Learning ND program https://www.udacity.com/course/deep-learning-nanodegree--nd101

DeepLearning-1

深度学习入门教程, 优秀文章, Deep Learning Tutorial

EffectorP-3.0

Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes

Guideline-for-Computational-Biology-and-Bioinformatics

leetcode

LeetCode Solutions: A Record of My Problem Solving Journey.( leetcode题解，记录自己的leetcode解题之路。)

Lihang

Statistical learning methods, 统计学习方法(第2版)[李航] [笔记, 代码, notebook, 参考文献, Errata, lihang]

PureCLIP

Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data

Python-AI

深度学习100例、深度学习DL、图片分类、目标识别、目标检测、自然语言处理nlp、文本分类、TensorFlow、PyTorch

RNA-seq-analysis

RNAseq analysis notes from Ming Tang

SARS-CoV-2_Ferret_BAL

scRNA-seq_online

SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

SPANDx

SPANDx - Comparative genomics for next-generation haploid sequence data

Statistical-Learning-Method_Code

手写实现李航《统计学习方法》书中全部算法

stringtie

Transcript assembly and quantification for RNA-Seq

TOAD

AI-based pathology predicts origins for cancers of unknown primary - Nature

torchstain

Stain normalization tools for histological analysis and computational pathology

tutorials

Tutorials on phylogenomic analyses for the ForBio Phylogenomics course

VCF2Dis

VCF2Dis: A new simple and efficient software to calculate p-distance matrix based Variant Call Format

WGCNA

weighted gene co-expression network analysis