yiqunchen

GenePT

KmeansInference

Quantifying uncertainty for k-means clustering

CADET

CADET: Clustering And Differential Expression Testing

SpikeInference

Quantifying uncertainty for spikes estimated from calcium imaging data

SpikeInference-experiments

Code and instructions to reproduce results and figures from the paper "Uncertainty quantification for spikes estimated from calcium imaging data"

yiqunchen.github.io

bilevel_coresets

Coresets via Bilevel Optimization

biostat_572_paper

We document code and procedures to reproduce the paper "Exact spike train inference via $\ell_0$ optimization"

CADET-experiments

clip-interrogator

Image to prompt with BLIP and CLIP

clusterpval-experiments

correlation_analysis_ms_fd_size

A repo for code used in generating final report for cse599 data analysis class

GFLassoInference

R package repository for Powerful Graph fused lasso Inference

DatasetCondensation

Dataset Condensation (ICLR21 and ICML21)

drugbank

User-friendly extensions of the DrugBank database

engage_analysis

Analysis code for engage manuscript

GFLassoInference-experiment

Code and instructions to reproduce results and figures from the paper "More powerful selective inference for the graph fused lasso"

gm-hw2

Homework 2 for Generative Models

hugo-ivy

A Hugo theme ported from Ivy

joss_paper_surprise

KmeansInference-experiments

Code and instructions to reproduce results and figures from the paper "Selective inference for k-means clustering"

optimaltransport.github.io

Web site of the Computational Optimal Transport book

parametric_generalized_lasso_selective_inference

More Powerful Conditional Selective Inference for Generalized Lasso by Parametric Programming

pp_si_example

RememberThePast-DatasetDistillation

rigr_sim_summer_2022

Simulation code used in rigr package development during summer 2022

skincon-dataset.github.io

SKINCON Dataset

TWIGMA

TWIGMA_code

umap-explorer

Building an interactive UMAP visualization of AI generated images