Yinkaai Wu's starred repositories

Gradient-Based-Optimizer-GBO-

A new metaheuristic optimization algorithm

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Optix

Python Gradient-Based Optimization Tool

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JAX-ReaxFF

JAX-ReaxFF: A Gradient Based Framework for Extremely Fast Optimization of Reactive Force Fields

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pwtools

pwtools is a Python package for pre- and postprocessing of atomistic calculations, mostly targeted to Quantum Espresso, CPMD, CP2K and LAMMPS. It is almost, but not quite, entirely unlike ASE, with some tools extending numpy/scipy. It has a set of powerful parsers and data types for storing calculation data.

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OAReactDiff

An object-aware diffusion model for generating chemical reactions

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submitit

Python 3.8+ toolbox for submitting jobs to Slurm

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simple_slurm

A simple Python wrapper for Slurm with flexibility in mind.

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scikit-opt

Genetic Algorithm, Particle Swarm Optimization, Simulated Annealing, Ant Colony Optimization Algorithm,Immune Algorithm, Artificial Fish Swarm Algorithm, Differential Evolution and TSP(Traveling salesman)

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indicator-sysmonitor

Ayatana application indicator to show various system parameters - Debian and Ubuntu

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vasp

New ASE compliant Python interface to VASP

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NN-ensemble-relaxer

Local geometry optimizer for molecules and crystals based on active learning with neural network ensemble

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pgvector

Open-source vector similarity search for Postgres

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ketcher

Web-based molecule sketcher

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web-server

CO2 catalyst database fe demo 1.0

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