Ana Cobian's repositories
Aaron
snakemake for Aaron's projects
bacteria-genome-annotation-phages
Annotation of bacteria genomes from a phage perspective
getaddons
Get extra regions in contigs assembly
getholes
Get regions with no coverage in a reference genome
phamut
Find mutations in a phage/viral genome
ViromicsWorkshop
Viromics workshop
CF032_PT
Data analysis for CF032 case study
CFRR
Cystic Fibrosis Rapid Response analysis pipeline
cheesecake-phage
Phage genomes annotation workshop August 2023
COVID19
Data analysis for Marisa Roja's project of environmental distribution of SARS-Cov-2
cute-hostrange-tables
How to make pretty host range tables
FRAP-example
Simple FRAP example
frap-heh
FRAP implementation using hash exact hit
FRAP-tools
Fragment Recruitment plots from FRAP
FRAPperformance
FRAP benchmarking
FREP-grep
FRAP implementation using grep
Global-Virome
Material from Cobian et al. 2016, "Viruses as winners in the game of life"
modELISA
Analysis of modified ELISA
modELISA-S
Screening for viral antibodies in saliva samples, using a modified ELISA with viral antigens
MR-blastx
aa database and SRA hits
reads-vs-NT
How to blast each read or contig vs NT and get tables by species
RecipeCards
Lab recipes
SRAsearch-to-info
Tools to explore SRA Search results
use-circulaline
Use of circulaline software