Youri Hoogstrate's repositories
glass-od
glass-od
idat-tools
Application to mix idat files (e.g. tumor with normal)
glass-nl
GLASS-NL RNA-seq
fibronectin-splice-variant-detector
fibronectin-splice-variant-detector
egfr-v3-determiner
Free open-source tool to extract counts of spliced EGFR vIII / EGFR non-vIII (wt) reads
bio-kernel
Official landing place of the bio-kernel project
pymetharray
Modified fork of "Python-based preprocessing software for Illumina methylation arrays"
ega-upload
README how to upload seq data into EGA
scRNA-glioma-workflows
Workflows for the processing of public and in-house spatial and/or single cell/nucleus RNA-seq glioma datasets
recursiveCorPlot
Recursive correlation based natural clustering (using ggplot, labels and historgrams)
scRNA-glioma-project
single-cell and single-nucleus RNA-seq analysis of public data
cmatrix
Terminal based "The Matrix" like implementation
SoupX
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
naf
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
tacc3-fgfr3-bam-quick-scanner
Quick scan for reads mapped to both TACC3 and FGFR3 in order to find fusions
bam-lorenz-coverage
Generate Lorenz plots and Coverage plots directly from BAM files
vg
tools for working with variation graphs
segmentation-fold
:triangular_ruler: segmentation-fold: RNA folding including K-turns
geomnet
Examples and data for geom_net
snoekdobber3d
3D printer modellen voor snoekdobbers
sc_seurat
Scripts for single-cell 'omics analysis
flaimapper
:honeybee: Fragment Location Annotation Identification Mapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data
disc-art
Disc-Art - some kind of omics artifact analyser
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
bioconda-recipes
Conda recipes for the bioconda channel.