Yen On Chan's repositories
HAPPI_GWAS_2
The HAPPI_GWAS_2 is a pipeline built for genome-wide association study (GWAS).
VisualVariants
The goal of this project is to create a R package and executable scripts to visualize variants in Variant Call Format (VCF) files and Bcftools processed tab-delimited files.
AlleleCatalog
The AlleleCatalog pipeline is built for generating Allele Catalog datasets using next-generation sequencing (NGS) based genetic data and metadata.
AlleleCatalogTool
The Allele Catalog Tool is an Allele Catalog data visualization tool built using PHP, HTML, CSS, and JavaScript in Laravel Framework.
RideXpress
RideXpress is an Automated Car Rental System (ARCS) platform. This project is provided by Revature Coding Bootcamp for students who are interested in a web development career.
FactoryManager
This is a Java application which can record and organize data to help factory managers run their factories.
SoybeanAlleleCatalogTool
The Soybean Allele Catalog Tool is a Allele Catalog data visualization tool built using PHP, HTML, CSS, and JavaScript.
SoybeanGenVarX
The Soybean Genomic Variations Explorer (Soybean GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.
SoybeanMADisTool
The Soybean MADis Tool is a mutative allele discovery tool composed of mutative allele position combinative calculations and Allele Catalog visualization built using PHP, HTML, CSS, and JavaScript.
fastStructure
A variational framework for inferring population structure from SNP genotype data.
GenVarX_Data_Processing
This repository contains data processing scripts that were written and ran to generate CNV data using cn.MOPS and sequence logo figures using Ceqlogo in MEME suite.
Java_Assignments
(Fall 2017) [CMP_SC 3330 Object Oriented Programming]
PhenoDistTool
The Phenotype Distribution Tool (PhenoDistTool) is a tool to demonstrate statistical significance of phenotype distributions for alleles in variant positions.
SoybeanAccessionViewer
The Soybean Accession Viewer is a tool to provide visualization of soybean accessions related data.
SoybeanPhenoDistTool
The Soybean Phenotype Distribution Tool (Soybean PhenoDistTool) is a tool to demonstrate statistical significance of phenotype distributions for alleles in variant positions.