ybdong919

yibo dong's repositories

multi-ploidSNPs

a GBS-based pipeline for calling SNPs from a group of samples with different ploidy.

Language:Perl3 30

3GenomeSNP_pipeline

A pipeline to seperate NGS sequencing data into chloroplast, mitochondria and nuclear genomes, and then call SNPs in the 3 genomes respectively.

Language:Perl2 20

npGeno

bioinformatics pipeline that could generate genome-wide SNP genotype data for a conventional genetic diversity analysis of a non-model plant species

Language:Perl1 2 2

paSNPg

a GBS-based pipeline called paSNPg for protein-associated SNP (paSNP) discovery and genotyping in non-model organisms

Language:Perl100

an-association-between-gut-microbiome-and-obesity

Language:RGPL-3.0000

BMGAP

The Bacterial Meningitis Genome Analysis Platform, an analysis pipeline, ExpressJS API, and ReactJS webapp for the analysis and characterization of bacterial meningitis samples

Language:PythonApache-2.0000

Cecret

Nextflow workflow for our analysis of SARS-COV-2

MIT000

enzyme_cutting_simulation_scripts

These scripts are used for silic simulation analysis of enzyme-cutting-genome

Language:Perl000

NCHHSTP-DTBE-Varpipe-WGS

This repository contains an analysis pipeline developed to characterize WGS output

Language:HTMLApache-2.0000

Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to construct a phylogenetic tree. Provides evolutionary analyses (genes under positive selection) using CDS SNPs.

GPL-3.0000