yangyushi

FishPy

Python Scripts for processing fish videos

explore_lif

load an image from lif file as a numpy array

FishSim

Simulating collective behaviour of fish

tcclib

Python wrapper for Topological Cluster Classification

nplocate

locate nano particles in 3D volumetric confocal images

phd-thesis-yy-bristol-2022

Yushi Yang PhD Thesis 2022 University of Bristol

segview

visualising segmentation result

BoidsFun

Boids model simulation for fun

draw_spheres_3d

Draw binary sphere in a 3D image

TCC

The Topological Cluster Classification algorithm

yaggie

package used in THETA project in BCFN

yangyushi.github.io

my notebook

excel-data-plotter

Developed with the help of chatGPT. Prompt history included in the commits.

hsmc

Hard Sphere Monte Carlo Simulation

Beaucoup-Fish-Simulation

Dynamical order and many-body correlations in zebrafish show that three is a crowd

brcs

biased random colours

bulb_control

controlling TP-Link smart bulb (Kasa) for scientific reasons

colloids

Python and C++ library to process both experimental and simulation data of colloidal particles.

Coursera_Capstone

To submit the assignments for the data science course on Coursera

expdyn

dynamical analysis for experimental trajectories

ezdata

handy gui app to process experimental data

first-contributions

🚀✨ Help beginners to contribute to open source projects

FishPy-Benchmark

Benchmarking the 3D Tracking Accuracy of FishPy package. Also serves as a demonstration.

ising-mc

simulation just for fun!

learn-tiff

Learning to work with lib tiff

peri

Parameter Extraction from Reconstructing Images

projective_correct

example code to correct the projective in the image

vim-config-yy

zefiia

zebrafish image analysis