yangkky

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Cambridge, MA

yangkky.github.io

@KevinKaichuang

Kevin Kaichuang Yang's starred repositories

alphafold

Open source code for AlphaFold.

Language:PythonApache-2.01215000

DeepSpeed

DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.

Language:PythonApache-2.03402400

seqdesign-pytorch

Protein design and variant prediction using autoregressive generative models

Language:PythonMIT2100

glycowork

Package for processing and analyzing glycans and their role in biology.

Language:Jupyter NotebookMIT5600

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

Language:PythonMIT153400

nero

👑 Pytorch code for the Nero optimiser.

Language:PythonNOASSERTION2000

uncertainty-toolbox

Uncertainty Toolbox: a Python toolbox for predictive uncertainty quantification, calibration, metrics, and visualization

Language:PythonMIT177100

collaborative-attention

Code for Multi-Head Attention: Collaborate Instead of Concatenate

Language:PythonApache-2.014700

csgmcmc

Cyclical Stochastic Gradient MCMC for Bayesian Deep Learning

Language:Jupyter Notebook9000

tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

Language:PythonBSD-3-Clause64200

UniLanguage

Homology reduced UniProt, train-/valid-/testsets for language modeling

Language:Python1600

handout

Turn Python scripts into handouts with Markdown and figures

Language:PythonApache-2.0199900

rootstock

Clone me to create your Manubot manuscript

Language:HTMLNOASSERTION44800

deep-learning-guide

An evolving guide to learning Deep Learning effectively.

research

Supervised and RL Models for No Press Diplomacy

Language:PythonMIT5900

Machine-learning-for-proteins

Listing of papers about machine learning for proteins.

GPL-3.0145800