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yangdongxu (yang-dongxu)

yang-dongxu

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ImSpiRE

ImSpiRE is an Image features-aided Spatial Resolution Enhancement method for in situ capturing (ISC) datasets. It is written in Python 3.8 and requires CellProfiler 4.2.1. It is available as a command line tool, a Python library and a docker image to meet the needs of different users.

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nbsphinx-link

A sphinx extension for including notebook files from outside sphinx source root.

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ChromBERT

ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network

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Perplexica

Perplexica is an AI-powered search engine. It is an Open source alternative to Perplexity AI

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marimo

A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

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shell_gpt

A command-line productivity tool powered by AI large language models like GPT-4, will help you accomplish your tasks faster and more efficiently.

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coconut

Simple, elegant, Pythonic functional programming.

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biotools_dxy

Self-defined packages for orgainze bioinformatics related functions

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fastauc

Three fast ROC AUC calculation implementations for python

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fastauc

Three fast ROC AUC calculation implementations for python

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Awesome-Marp

🤙 Easy replacement for LaTeX Beamer! 🥂 custom Marp templates with a selection of over a dozen themes

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neovim

Vim-fork focused on extensibility and usability

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marker

Convert PDF to markdown quickly with high accuracy

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MemGPT

Create LLM agents with long-term memory and custom tools 📚🦙

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pykan

Kolmogorov Arnold Networks

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molten-nvim

A neovim plugin for interactively running code with the jupyter kernel. Fork of magma-nvim with improvements in image rendering, performance, and more

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enformer-pytorch

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

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lobe-chat

🤯 Lobe Chat - an open-source, modern-design LLMs/AI chat framework. Supports Multi AI Providers( OpenAI / Claude 3 / Gemini / Ollama / Bedrock / Azure / Mistral / Perplexity ), Multi-Modals (Vision/TTS) and plugin system. One-click FREE deployment of your private ChatGPT chat application.

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private-gpt

Interact with your documents using the power of GPT, 100% privately, no data leaks

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AutoBA

An AI Agent for Fully Automated Multi-omic Analyses

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FastGPT

FastGPT is a knowledge-based platform built on the LLMs, offers a comprehensive suite of out-of-the-box capabilities such as data processing, RAG retrieval, and visual AI workflow orchestration, letting you easily develop and deploy complex question-answering systems without the need for extensive setup or configuration.

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utools-plugin-chat

A Utools plugin for ChatGPT and Bing AI

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rubick

🔧 Electron based open source toolbox, free integration of rich plug-ins. 基于 electron 的开源工具箱，自由集成丰富插件。

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ChromBERT

ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network

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pdfGPT

PDF GPT allows you to chat with the contents of your PDF file by using GPT capabilities. The most effective open source solution to turn your pdf files in a chatbot!

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weekly

生信爱好者周刊（每周日发布）

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OpenDevin

🐚 OpenDevin: Code Less, Make More

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tabby

A terminal for a more modern age

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Unshackle

Lets you write unrestricted noita mods for steam workshop.

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ChatGPT-Next-Web

A cross-platform ChatGPT/Gemini UI (Web / PWA / Linux / Win / MacOS). 一键拥有你自己的跨平台 ChatGPT/Gemini 应用。

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