yafeiwang89 / liver_medium

nanoHUB GUI-liver tissue mechanobiology

Source code of nanoHUB GUI-liver tissue mechanobiology

This repository contains code and data for the nanoHUB app: https://nanohub.org/tools/pc4livermedium

Citing

If you use the code in your work, please cite Impact of tumor-parenchyma biomechanics on liver metastatic progression: a multi-model approach.

@article {Wang2020.05.04.074989,
	author = {Wang, Yafei and Brodin, Erik and Nishii, Kenichiro and Frieboes, Hermann B and Mumenthaler, Shannon and Sparks, Jessica L and Macklin, Paul},
	title = {Impact of tumor-parenchyma biomechanics on liver metastatic progression: a multi-model approach},
	elocation-id = {2020.05.04.074989},
	year = {2020},
	doi = {10.1101/2020.05.04.074989},
	publisher = {Cold Spring Harbor Laboratory},
	URL = {https://www.biorxiv.org/content/early/2020/05/05/2020.05.04.074989},
	eprint = {https://www.biorxiv.org/content/early/2020/05/05/2020.05.04.074989.full.pdf},
	journal = {bioRxiv}
}

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Release summary:

1.3:

• This version is actually same as 2.0. It's released in order to match with nanoHUB gui version

2.0:

• Add an animate tap
• Fix bugs in src/custom_modules/liver_functions.cpp

void HCT116_phenotype_update_function( Cell* pCell , Phenotype& phenotype, double dt )
{
    static int start_phase_index = Ki67_advanced.find_phase_index( PhysiCell_constants::Ki67_negative ); // 0
    static int end_phase_index = Ki67_advanced.find_phase_index( PhysiCell_constants::Ki67_positive_premitotic ); // 1
}

1.0:

This is initial release.