y-chu

Me-LLaMA

A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks

bio-lm

We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.

BayesianOptimization

A Python implementation of global optimization with gaussian processes.

ClinicalTransformerNER

a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms

clinicalBERT

repository for Publicly Available Clinical BERT Embeddings

clip-as-service

🏄 Scalable embedding, reasoning, ranking for images and sentences with CLIP

BertWithPretrained

An implementation of the BERT model and its related downstream tasks based on the PyTorch framework

biobert

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

biobert-pretrained

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

clinical-concepts

Discovering Related Clinical Concepts using Large Amounts of Clinical Notes. An unsupervised graphical approach to mine related concepts by leveraging the volume within large amounts of clinical notes.

medical-nlp

Dataset for Natural Language Processing using a corpus of medical transcriptions and custom-generated clinical stop words and vocabulary.

hunspell

High-Performance Stemmer, Tokenizer, and Spell Checker for R

cim-misspelling

Context-Sensitive Misspelling Correction of Clinical Text via Conditional Independence, CHIL 2022

DUO

Ontology for consent codes and data use requirements

Pretrained-Language-Model

Pretrained language model and its related optimization techniques developed by Huawei Noah's Ark Lab.

bert

TensorFlow code and pre-trained models for BERT

julia-vscode

Julia extension for Visual Studio Code

Lectures

This repository contains slides from some of the classes I have taught in my career. The repository will be updated from time to time. If you are interested in the .tex files and other material (e.g., lab material) for your own course preparation, feel free to reach out directly to me.

FraudDetection

Accounting Fraud Detection Using Machine Learning

Model_Omicron_China

econometrics

Slides for the PhD level course in Econometrics at the Tinbergen Institute, Amsterdam

handle

A Chinese Hanzi variation of Wordle - 汉字 Wordle

2020-ncov

Accompanying code for: Kucharski AJ, Russell TW et al. Early dynamics of transmission and control of COVID-19: a mathematical modelling study. Lancet Infectious Diseases, 2020

r-macos-rtools

Scripts to build an **unofficial** Rtools-esq installer for the macOS R toolchain

covid-19-data

Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data

theme-academic-cv

🎓 无需编写任何代码即可轻松创建漂亮的学术网站 Easily create a beautiful academic résumé or educational website using Hugo and GitHub. No code.

Tutorials

Code for the Actuarial Data Science Tutorials published at https://actuarialdatascience.org.

python-socialsci

Data Analysis and Visualization with Python for Social Scientists

openva_pipeline

Software for automating the processing of verbal autopsy data.

DHIS2_VA_program

DHIS2 VA program metadata repository