xl_g's repositories
AnchorWave
sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
assigner
Population assignment analysis using R
bamdst
a lightweight bam file depth statistical tool
barrnap
:microscope: :leo: Bacterial ribosomal RNA predictor
bin
scripts
Circos-Pipeline
circos pipeline
cpanminus
cpanminus - get, unpack, build and install modules from CPAN
dotPlotly
Generate an interactive dot plot from mummer or minimap alignments
Dsuite
Fast calculation of Paterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
Genome-data-of-Hanfu-apple
FASTA files of chromosomes and genes, gff files for gene models.
genome-scripts
Genome Scripts used in fungal comparative genomics
genomics_general
General tools for genomic analyses.
gff2gtf
AWK script for conversion of GFF files to GTF.
iTAK
iTAK
MashMap
A fast approximate aligner for long DNA sequences
NLR-Annotator
NLR-Annotator upload
radiator
RADseq Data Exploration, Manipulation and Visualization using R
ranger
A VIM-inspired filemanager for the console
rbh
Finds reciprocal-best-hit matches between two all-by-all BLAST searches
Sniffles
Structural variation caller using third generation sequencing
vcflib
C++ library and cmdline tools for parsing and manipulating VCF files