xvazquezc's repositories
one-liners
Just a collection of usefull one-liners, often a bit too long to remember
anvio.org
The anvi'o community web page
Assemblytics
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
bioconda-recipes
Conda recipes for the bioconda channel.
cheatsheets
My cheatsheets
ColabFold
Making Protein folding accessible to all via Google Colab!
conda-recipes
bioinformatics program recipes for the conda package manager
dfast_core
DDBJ Fast Annotation and Submission Tool
EMBLmyGFF3
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
funannotate
Eukaryotic Genome Annotation Pipeline
gene2product
Curated list of gene names and product descriptions that pass NCBI genome submission rules.
HERA-PBSPro
This is a PBSPro (Protable Batch System) based pipeline to perform HERA (Highly Efficient Repeat Assembly) program.
jekyll-scholar
jekyll extensions for the blogging scholar
markdown-cv
a simple template to write your CV in a readable markdown file and use CSS to publish/print it.
metabolic-hmms
HMM databases for microbial metabolic genes of environmental/biogeochemical importance.
multiPhATE2
multiPhATE with comparative genomics
OTUsamples2krona
Simple script to generate Krona charts for all samples in an OTU table file
PenrynTutorial
Metagenomics tutorials for Penryn symposium