A modified package of EstimateClonality
EstimateClonality is an R package which uses read count and copy number information to temporally and clonally dissect SNVs, written by Nicholas McGranahan (nicholas.mcgranahan@cancer.org.uk).
This version fixes some issues in the original code and makes a little optimization.
Major changes
- The original R package is not compatible with sequenza version 3.0. Now the earlyORlate() function is compatible.
- Added support for FACETS and CNVKIT (non ASCAT data).
Minor changes
- Part of the code is simplified.