xunxun66's repositories
allbiotc2
Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
bio-pipeline
My collection of light bioinformatics analysis pipelines for specific tasks
BMC_phylogeny_corpus
A plain text corpus consisting of 7948 articles from BMC journals mentioning the wordstem 'phylogen*' somewhere in the full text of the paper. (All content CC BY http://creativecommons.org/licenses/by/3.0/ and copyright of the authors)
bovine-assembly
bovine assembly central repo
cactus
Official home of genome aligner based upon notion of Cactus graphs
FASTKs
Pipeline for generate Ks plots of transcriptome data.
LRA
Long read aligner
PopLDdecay
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
presentations
Presentations from the course
scripts
Scripts for analysis used during the course
SynNet-Pipeline
Workflow for Building Microsynteny Networks
TGS-GapCloser
A gap-closing software tool that uses long reads to enhance genome assembly.
UpSetPlot
Draw UpSet plots with Matplotlib