xuehansheng

recommenders

Best Practices on Recommendation Systems

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

benchmarking-gnns

Repository for benchmarking graph neural networks

attention-learn-to-route

Attention based model for learning to solve different routing problems

graphein

Protein Graph Library

awesome-deep-learning-single-cell-papers

Awesome-DynamicGraphLearning

Awesome papers about machine learning (deep learning) on dynamic (temporal) graphs (networks / knowledge graphs).

single-cell-pseudotime

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

graph-neural-pde

Graph Neural PDEs

graph-convnet-tsp

Code for the paper 'An Efficient Graph Convolutional Network Technique for the Travelling Salesman Problem' (INFORMS Annual Meeting Session 2019)

deep-graph-matching-consensus

Implementation of "Deep Graph Matching Consensus" in PyTorch

pepper

PEPPER-Margin-DeepVariant

neural-astar

Official implementation of "Path Planning using Neural A* Search" (ICML-21)

BrainGB

Officially Accepted to IEEE Transactions on Medical Imaging (TMI, IF: 11.037) - Special Issue on Geometric Deep Learning in Medical Imaging.

co-with-gnns-example

DrugCell

A visible neural network model for drug response prediction

CONCOCT

Clustering cONtigs with COverage and ComposiTion

roland

PPO-BiHyb

Implementation of our NeurIPS 2021 paper "A Bi-Level Framework for Learning to Solve Combinatorial Optimization on Graphs".

scnym

Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

DGB

Dynamic Graph Benchmark

BIONIC

Biological Network Integration using Convolutions

stellar

flopp

flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.

HaploConduct

Haplotype-aware genome assembly toolkit

Neighborhood-Aware-Temporal-Network

Yuhong Luo and Pan Li. Neighborhood-aware scalable temporal network representation learning. In Learning on Graphs, 2022.

HYFA

Hypergraph Factorisation

OCAT

omicsGAN

transformers.satisfy

propositional satisfiability problem (SAT) goes neural and deep