Chang Xu's repositories
smCounter
smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller", BMC Genomics, 2017 18:5. https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-3425-4
qiaseq-dna
smCounter2 is (sadly!) no longer open source for business reasons. But the code can be requested from the corresponding authors for non-commercial use.