Beisi Xu (xubeisi)

xubeisi

Geek Repo

Company:St Jude Children's Research Hospital

Location:United States

Home Page:https://orcid.org/0000-0003-0099-858X

Github PK Tool:Github PK Tool


Organizations
stjudecab

Beisi Xu's repositories

pikpak

pikpak web https://xubeisi.github.io/pikpak

Language:VueStargazers:2Issues:0Issues:0

RSSHub

🍰 Everything is RSSible

Language:JavaScriptLicense:MITStargazers:1Issues:0Issues:0

translatesubs

It's a tool to translate subtitles into any language, that is supported by google translator :)

Language:PythonLicense:Apache-2.0Stargazers:1Issues:0Issues:0

deepTools

Tools to process and analyze deep sequencing data.

Language:PythonLicense:NOASSERTIONStargazers:0Issues:1Issues:0

intervene-shiny

An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps

Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0

protiler

ProTiler method for the analysis and visualization of CRISPR screens with tiling-sgRNA design

Language:PythonStargazers:0Issues:0Issues:0
Language:JavaScriptStargazers:0Issues:0Issues:0

AriaNg

AriaNg, support aria2c command-line-like

Language:JavaScriptLicense:MITStargazers:0Issues:0Issues:0

Batch-effect-removal-benchmarking

A benchmark of batch-effect correction methods for single-cell RNA sequencing data

Stargazers:0Issues:0Issues:0

bsseq

Devel repository for bsseq

Language:RStargazers:0Issues:0Issues:0

cellranger

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

License:NOASSERTIONStargazers:0Issues:0Issues:0

cellxgene_VIP

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

Language:HTMLLicense:MITStargazers:0Issues:0Issues:0

drugVQA

Predicting Drug Protein Interaction using Quasi-Visual Question Answering System

License:MITStargazers:0Issues:0Issues:0

easy_af2

Easy to AF2

License:Apache-2.0Stargazers:0Issues:0Issues:0
Language:RustStargazers:0Issues:0Issues:0

ggalluvial

Shiny only for https://github.com/corybrunson/ggalluvial

Language:RLicense:GPL-3.0Stargazers:0Issues:0Issues:0

how_are_we_stranded_here

Check strandedness of RNA-Seq fastq files

Language:PythonLicense:MITStargazers:0Issues:0Issues:0

igv.js

Lightweight html5 version of the Integrative Genomics Viewer

Language:JavaScriptLicense:MITStargazers:0Issues:0Issues:0

InteractiveComplexHeatmap

Make Interactive Complex Heatmaps

Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0

lago

Open Source Metering and Usage Based Billing

Language:ShellLicense:AGPL-3.0Stargazers:0Issues:0Issues:0
Language:RustStargazers:0Issues:0Issues:0

mind2mm

Simple tool, that convert mindmester.com files to FreeMind format

Language:PythonStargazers:0Issues:1Issues:0

panel

Panel: The powerful data exploration & web app framework for Python

License:BSD-3-ClauseStargazers:0Issues:0Issues:0

pantherapi-pyclient

Example code for calling Panther API services

Language:PythonStargazers:0Issues:0Issues:0

RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold

License:MITStargazers:0Issues:0Issues:0

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

License:MITStargazers:0Issues:0Issues:0

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Language:NextflowLicense:MITStargazers:0Issues:0Issues:0

slamdunk

Streamlining SLAM-seq analysis with ultra-high sensitivity

License:AGPL-3.0Stargazers:0Issues:0Issues:0

streamlit-example

Example Streamlit app that you can fork to test out share.streamlit.io

Language:PythonStargazers:0Issues:1Issues:0

StripeCaller

A toolkit for analyzing architectural stripes

License:GPL-3.0Stargazers:0Issues:0Issues:0