Beisi Xu's repositories
translatesubs
It's a tool to translate subtitles into any language, that is supported by google translator :)
intervene-shiny
An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps
protiler
ProTiler method for the analysis and visualization of CRISPR screens with tiling-sgRNA design
xubeisi.github.io
Beisi Xu
AriaNg
AriaNg, support aria2c command-line-like
Batch-effect-removal-benchmarking
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
bsseq
Devel repository for bsseq
cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
drugVQA
Predicting Drug Protein Interaction using Quasi-Visual Question Answering System
easy_af2
Easy to AF2
ggalluvial
Shiny only for https://github.com/corybrunson/ggalluvial
how_are_we_stranded_here
Check strandedness of RNA-Seq fastq files
igv.js
Lightweight html5 version of the Integrative Genomics Viewer
InteractiveComplexHeatmap
Make Interactive Complex Heatmaps
lago
Open Source Metering and Usage Based Billing
panel
Panel: The powerful data exploration & web app framework for Python
pantherapi-pyclient
Example code for calling Panther API services
RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
slamdunk
Streamlining SLAM-seq analysis with ultra-high sensitivity
streamlit-example
Example Streamlit app that you can fork to test out share.streamlit.io
StripeCaller
A toolkit for analyzing architectural stripes