xtYao

Xiaotong_Yao_Thesis

PhD thesis

blog.hugo

bwa-mem2

The next version of bwa-mem

CaseReport

Clinical whole genome sequencing report

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

findNewEnhancers_CIntestinalis

The final project for Bioinformatics & Genomes (Bonneau. R). Using MEME to detect conserved motifs in the intergenic regions of co-regulated genes given by clustered time-course micro array data.

fishHook

R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.

funcSUMO

To determine what set of gene feature contribute to a RNA binding protein coding gene to be coding a SUMOylated protein.

gallery

making interesting pictures of SV in cancer genomes

gTrack

R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

GxG

Scalable GenomicRanges based class for storing, manipulating, and querying genomic matrices and pairwise features.

homepage

Xiaotong Yao's homepage

iSumo

Analysis for the iSumo paper.

JaBbA_alpha

R scripts and datasets for reproducing the figures used in JaBbA paper

partialDelly

running certain modes of DELLY on just a subset of a BAM file

presentations

Materials for presentations

pyranges

Performant Pythonic GenomicRanges

QG16_computerlab

Computer_Lab_Material_for_QG16

site

The source code of learning-rust.github.io

skitools

General purpose mskilab R tools

tutorials

Tutorials covering various topics in genomic data analysis.

xtyao.github.io

Xiaotong Yao's site

xtYao.hugo

hugo styled blog