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Rock_Kong_20th's starred repositories

minikube

Run Kubernetes locally

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showyourwork

A workflow for reproducible and open scientific articles

Language:TeXMIT55600

LaTeX

从零开始 LaTeX 快速入门

6700

PyLaTeX

A Python library for creating LaTeX files

Language:PythonMIT223500

scrnabox

A pipeline for scRNA analysis under HPC

Language:HTMLMIT700

conquer

consistent quantification of external RNA-seq data sets

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rtg-tools

RTG Tools: Utilities for accurate VCF comparison and manipulation

Language:JavaBSD-2-Clause28600

Python

最良心的 Python 教程：

1989400

sge

Some Grid Engine/Son of Grid Engine/Sun Grid Engine

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SURVIVOR

Toolset for SV simulation, comparison and filtering

Language:C++MIT34500

gonb

GoNB, a Go Notebook Kernel for Jupyter

Language:GoMIT57800

bio

A lightweight and high-performance bioinformatics package in Golang

Language:GoMIT9200

uptime-kuma

A fancy self-hosted monitoring tool

Language:JavaScriptMIT5522400

sv-benchmark

Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data

4400

truvari

Structural variant toolkit for VCFs

Language:PythonMIT30700

webssh

:seedling: Web based ssh client

Language:PythonMIT443800

shellinabox

Official-ish Fork of Shell In A Box

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witty.er

What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.

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hap.py

Haplotype VCF comparison tools

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loguru

Python logging made (stupidly) simple

Language:PythonMIT1933300

vcfpy

Python 3 library with good support for both reading and writing VCF

Language:PythonMIT9300

TVBOX-

一木TVBOX自用仓库

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CNVpytor

a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

Language:PythonMIT17600

smoove

structural variant calling and genotyping with existing tools, but, smoothly.

Language:GoApache-2.023000

sansa

Structural variant VCF annotation, duplicate removal and comparison

Language:C++BSD-3-Clause2500

wave

On-demand containers provisioning service

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awesome-vdj

📚 Tools and databases for analyzing HLA and VDJ genes.

CC0-1.020000

GSEApy

Gene Set Enrichment Analysis in Python

Language:PythonBSD-3-Clause53800

Nebulosa

R package to visualize gene expression data based on weighted kernel density estimation

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ggsc

🧠 Visualizing Single Cell and Spatial Transcriptomics

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