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Xiavan Roopnarinesingh's repositories

DSW2021

Data Science Workshop Prez 2021

Language:Jupyter Notebook100

SPUG2019

Intro to Data Visualization with Python

Language:Jupyter Notebook100

450k-analysis

tools and notebook examples for analyzing 450k data

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combat.py

python / numpy / pandas / patsy version of ComBat for removing batch effects.

Language:PythonMIT010

covid-vaccine-tracker

expanded version of my toy covid tracker in dash

Language:Python020

dash-heroku-template

Fool-proof template for deploying Dash apps on Heroku

Language:Python010

dotfiles

backup of workstation dotfiles

020

GDC-paired-expression

Notebooks showing linear/nonlinear correlations across methylation and expression across GDC paired meth/exp dataset from autoGDC.

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geo-browser

testing viability of code-less front end for automating common collaborator analyses for microarray data.

Language:Python000

methylation-AE

Using keras autoencoders reduce methylation and predict gene function

Language:Python000

NirvanaJSON

extract terms from Nirvana JSON to dump into VCF annotations from example JSON Python notebook

000

TDA

Trend deviation analysis of gene expression/methylation microarray data. Use correlations of a given sample and compare to expression changes across all samples.

Language:Jupyter Notebook020

xroopnar.github.io

Github Pages Test using academicpages.github.io template

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