xmc811 / Scillus

R Package for Single-Cell Dataset Processing and Visualization

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[Bug]

JulioLeonIncio opened this issue · comments

Describe the bug
I get some genes out of the marker genes as NA
image

thank you!

Julio

Would you please check which data slot those NA genes are in? Currently, the function gets gene data from DefaultAssay() and "scale.data":

mat <- GetAssayData(object = dataset, assay = DefaultAssay(dataset), slot = "scale.data")

Thanks for your response. I confirmed that the genes are not on the scale. data slot. Any change to make slot data modifiable in your function?

problem solved:
image
thanks,
Julio