xmao - Giters

Xizeng (Ethan) Mao's repositories

KOBAS: a command line tool for identifying significant pathways from genomic data

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KIT (Keep It sTupid): Yet another keyword-based manager of small command line tools

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Some utility functions to manipulate SAM/BAM files

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cBioPortal for MD Anderson Cancer Center

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Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

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A suite of utilities for converting to and working with CSV, the king of tabular file formats.

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Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.

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monaco font patched with extra nerd glyphs

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Module for practical Python one-liners

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Community-provided extensions to Seurat

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Code for STM paper

Cross-platform subsystem of console environment on windows, mac and linux.

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Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

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Aggregate results from bioinformatics analyses across many samples into a single report.

Language:JavaScriptGPL-3.0000

Package for pooling the results from (dependent) tests

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