xiyupeng

topic_modeling

Latent Dirichlet Allocation with application on Longitudinal Flow Cytometry Data

Microbiome-16S

R codes for statistical analysis on microbiome 16S Amplicon Data

SpaTopic

An R package for fast topic inference to identify tissue architecture in multiplexed images

AmpliCI-UMI

AmpliCI with UMI information

AmpliCI

AmpliCI, a model-based algorithm for denoising Illumina amplicon data.

HMM-model-for-Mi-seq

Baum Welch algorithm to solve the HMM model for Mi-seq data

kallisto

Near-optimal RNA-Seq quantification

LDA_examples

This folder contains all files for the github pages.

MCMC

MCMC for Hierarchical possion models

metacell

Metacell - Single-cell mRNA Analysis

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

MIF

R codes for statistical analysis on whole-slide multiplexed imaging data for melanoma patients.

motif

Use Branch And Bound Strategy to find motif of several DNA sequences

raw_loess

RcppArmadillo

Rcpp integration for the Armadillo templated linear algebra library

rmath

The R Standalone Math Library with modern CMake support

rna-seq-tsne

The art of using t-SNE for single-cell transcriptomics

SSCO

Find the genes involved in start-stop codon overlaping in prokaryotic genome