🔥🔥This is a collection of awesome articles about diffusion models in the medical imaging🔥🔥
📢 Our survey paper published on arXiv: Diffusion Models for Medical Image Analysis: A Comprehensive Survey ❤️
@article{kazerouni2022diffusion,
title={Diffusion models for medical image analysis: A comprehensive survey},
author={Kazerouni, Amirhossein and Aghdam, Ehsan Khodapanah and Heidari, Moein and Azad, Reza and Fayyaz, Mohsen and Hacihaliloglu, Ilker and Merhof, Dorit},
journal={arXiv preprint arXiv:2211.07804},
year={2022}
}
- Third release: Soon!
- 😎 April 8, 2023: Our paper is accepted for publication in the Medical Image Analysis Journal (IF: 13.83) 😎
- Second release: March 29, 2023
- Corrected mistakes and fixed typos
- Reorganized all sections
- Improved "Introduction"
- Changed the "Taxonomy" section to "Theory" and provided a new taxonomy for algorithms
- Expanded and provided more comprehensive discussion in "Clinical importance," "Comparative overview," and "Future direction open challenges" sections
- Added some new papers in the "Diffusion Models in Action" section
- Updated references
- First release: November 14, 2022
Diffusion Models for Medical Image Analysis: A Comprehensive Survey
Amirhossein Kazerouni, Ehsan Khodapanah Aghdam, Moein Heidari, Reza Azad, Mohsen Fayyaz, Ilker Hacihaliloglu, Dorit Merhof
[14th Nov., 2022] [arXiv, 2022]
[Paper]
Efficient Diffusion Models for Vision: A Survey
Anwaar Ulhaq, Naveed Akhtar, Ganna Pogrebna
[7th Oct., 2022] [arXiv, 2022]
[Paper]
Diffusion Models in Vision: A Survey
Florinel-Alin Croitoru, Vlad Hondru, Radu Tudor Ionescu, Mubarak Shah
[10th Sep., 2022] [arXiv, 2022]
[Paper] [Github]
A Survey on Generative Diffusion Model
Hanqun Cao, Cheng Tan, Zhangyang Gao, Guangyong Chen, Pheng-Ann Heng, Stan Z. Li
[6th Sep., 2022] [arXiv, 2022]
[Paper] [Github]
Diffusion Models: A Comprehensive Survey of Methods and Applications
Ling Yang, Zhilong Zhang, Yang Song, Shenda Hong, Runsheng Xu, Yue Zhao, Yingxia Shao, Wentao Zhang, Bin Cui, Ming-Hsuan Yang
[2nd Sep., 2022] [arXiv, 2022]
[Paper] [Github]
Reversing the Abnormal: Pseudo-Healthy Generative Networks for Anomaly Detection
Cosmin I Bercea, Benedikt Wiestler, Daniel Rueckert, Julia A Schnabel
[15th Mar., 2023] [arXiv, 2023]
[Paper]
Patched Diffusion Models for Unsupervised Anomaly Detection in Brain MRI
Finn Behrendt, Debayan Bhattacharya, Julia Krüger, Roland Opfer, Alexander Schlaefer
[7th Mar., 2023] [MIDL, 2023]
[Paper] [Github]
Dissolving Is Amplifying: Towards Fine-Grained Anomaly Detection
Jian Shi, Pengyi Zhang, Ni Zhang, Hakim Ghazzai, Yehia Massoud
[28th Feb., 2023] [arXiv, 2023]
[Paper]
The role of noise in denoising models for anomaly detection in medical images
Antanas Kascenas, Pedro Sanchez, Patrick Schrempf, Chaoyang Wang, William Clackett, Shadia S. Mikhael, Jeremy P. Voisey, Keith Goatman, Alexander Weir, Nicolas Pugeault, Sotirios A. Tsaftaris, Alison Q. O'Neil
[19th Jan., 2023] [arXiv, 2023]
[Paper] [Github]
What is Healthy? Generative Counterfactual Diffusion for Lesion Localization
Pedro Sanchez, Antanas Kascenas, Xiao Liu, Alison Q. O'Neil, Sotirios A. Tsaftaris
[25th Jul., 2022] [MICCAI Workshop, 2022]
[Paper] [Github]
AnoDDPM: Anomaly Detection with Denoising Diffusion Probabilistic Models using Simplex Noise
Julian Wyatt, Adam Leach, Sebastian M. Schmon, Chris G. Willcocks
[1st Jun., 2022] [CVPR Workshop, 2022]
[Paper] [Github]
The Swiss Army Knife for Image-to-Image Translation: Multi-Task Diffusion Models
Julia Wolleb, Robin Sandkühler, Florentin Bieder, Philippe C. Cattin
[6th Apr., 2022] [arXiv, 2022]
[Paper]
Diffusion Models for Medical Anomaly Detection
Julia Wolleb, Florentin Bieder, Robin Sandkühler, Philippe C. Cattin
[8th Mar., 2022] [MICCAI, 2022]
[Paper] [Github]
CoreDiff: Contextual Error-Modulated Generalized Diffusion Model for Low-Dose CT Denoising and Generalization
Qi Gao, Zilong Li, Junping Zhang, Yi Zhang, Hongming Shan
[4th Apr., 2023] [arXiv, 2023]
[Paper]
DDM2: Self-Supervised Diffusion MRI Denoising with Generative Diffusion Models
Tiange Xiang, Mahmut Yurt, Ali B Syed, Kawin Setsompop, Akshay Chaudhari
[6th Feb., 2023] [ICLR, 2023]
[Paper] [Github]
Low-Dose CT Using Denoising Diffusion Probabilistic Model for 20× Speedup
Wenjun Xia, Qing Lyu, Ge Wang
[29th Sep., 2022] [arXiv, 2022]
[Paper]
PET image denoising based on denoising diffusion probabilistic models
Kuang Gong, Keith A. Johnson, Georges El Fakhri, Quanzheng Li, Tinsu Pan
[13th Sep., 2022] [arXiv, 2022]
[Paper]
Unsupervised Denoising of Retinal OCT with Diffusion Probabilistic Model
Dewei Hu, Yuankai K. Tao, Ipek Oguz
[27th Jan., 2022] [Medical Imaging 2022: Image Processing]
[Paper] [Github]
Ambiguous Medical Image Segmentation using Diffusion Models
Aimon Rahman, Jeya Maria Jose Valanarasu, Ilker Hacihaliloglu, Vishal M Patel
[10th Apr., 2023] [arXiv, 2023]
[Paper] [Github]
BerDiff: Conditional Bernoulli Diffusion Model for Medical Image Segmentation
Tao Chen, Chenhui Wang, Hongming Shan
[10th Apr., 2023] [arXiv, 2023]
[Paper]
Diffusion Models for Memory-efficient Processing of 3D Medical Images
Florentin Bieder, Julia Wolleb, Alicia Durrer, Robin Sandkühler, Philippe C. Cattin
[27th Mar., 2023] [MIDL, 2023]
[Paper]
Distribution Aligned Diffusion and Prototype-guided network for Unsupervised Domain Adaptive Segmentation
Haipeng Zhou, Lei Zhu, Yuyin Zhou
[22nd Mar., 2023] [arXiv, 2023]
[Paper] [Github]
Diff-UNet: A Diffusion Embedded Network for Volumetric Segmentation
Zhaohu Xing, Liang Wan, Huazhu Fu, Guang Yang, Lei Zhu
[18th Mar., 2023] [arXiv, 2023]
[Paper] [Github]
Stochastic Segmentation with Conditional Categorical Diffusion Models
Lukas Zbinden, Lars Doorenbos, Theodoros Pissas, Raphael Sznitman, Pablo Márquez-Neila
[15th Mar., 2023] [arXiv, 2023]
[Paper] [Github]
Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation
Yunguan Fu, Yiwen Li, Shaheer U. Saeed, Matthew J. Clarkson, Yipeng Hu
[10th Mar., 2023] [arXiv, 2023]
[Paper] [Github]
Score-Based Generative Models for Medical Image Segmentation using Signed Distance Functions
Lea Bogensperger, Dominik Narnhofer, Filip Ilic, Thomas Pock
[10th Mar., 2023] [arXiv, 2023]
[Paper]
MedSegDiff-V2: Diffusion based Medical Image Segmentation with Transformer
Junde Wu, Rao Fu, Huihui Fang, Yu Zhang, Yanwu Xu
[19th Jan., 2023] [arXiv, 2023]
[Paper]
Improved HER2 Tumor Segmentation with Subtype Balancing using Deep Generative Networks
Mathias Öttl, Jana Mönius, Matthias Rübner, Carol I. Geppert, Jingna Qiu, Frauke Wilm, Arndt Hartmann, Matthias W. Beckmann, Peter A. Fasching, Andreas Maier, Ramona Erber, Katharina Breininger
[11th Nov., 2022] [arXiv, 2022]
[Paper]
MedSegDiff: Medical Image Segmentation with Diffusion Probabilistic Model
Junde Wu, Huihui Fang, Yu Zhang, Yehui Yang, Yanwu Xu
[1st Nov., 2022] [arXiv, 2022]
[Paper]
Accelerating Diffusion Models via Pre-segmentation Diffusion Sampling for Medical Image Segmentation
Xutao Guo, Yanwu Yang, Chenfei Ye, Shang Lu, Yang Xiang, Ting Ma
[27th Oct., 2022] [arXiv, 2022]
[Paper]
Diffusion Adversarial Representation Learning for Self-supervised Vessel Segmentation
Boah Kim, Yujin Oh, Jong Chul Ye
[19th Sep., 2022] [ICLR, 2023]
[Paper]
Can segmentation models be trained with fully synthetically generated data?
Virginia Fernandez, Walter Hugo Lopez Pinaya, Pedro Borges, Petru-Daniel Tudosiu, Mark S Graham, Tom Vercauteren, M Jorge Cardoso
[17th Sep., 2022] [MICCAI Workshop , 2022]
[Paper]
Diffusion Models for Implicit Image Segmentation Ensembles
Julia Wolleb, Robin Sandkühler, Florentin Bieder, Philippe Valmaggia, Philippe C. Cattin
[6th Dec., 2021] [MIDL, 2022]
[Paper] [Github]
Zero-shot Medical Image Translation via Frequency-Guided Diffusion Models
Yunxiang Li, Hua-Chieh Shao, Xiao Liang, Liyuan Chen, Ruiqi Li, Steve Jiang, Jing Wang, You Zhang
[5th Apr., 2023] [arXiv, 2023]
[Paper] [Github]
Class-Guided Image-to-Image Diffusion: Cell Painting from Brightfield Images with Class Labels
Jan Oscar Cross-Zamirski, Praveen Anand, Guy Williams, Elizabeth Mouchet, Yinhai Wang, Carola-Bibiane Schönlieb
[15th Mar., 2023] [arXiv, 2023]
[Paper] [Github]
Diffusion Models for Contrast Harmonization of Magnetic Resonance Images
Alicia Durrer, Julia Wolleb, Florentin Bieder, Tim Sinnecker, Matthias Weigel, Robin Sandkühler, Cristina Granziera, Özgür Yaldizli, Philippe C. Cattin
[14th Mar., 2023] [arXiv, 2023]
[Paper]
Zero-shot-Learning Cross-Modality Data Translation Through Mutual Information Guided Stochastic Diffusion
Zihao Wang, Yingyu Yang, Maxime Sermesant, Hervé Delingette, Ona Wu
[31st Jan., 2023] [arXiv, 2023]
[Paper]
Brain PET Synthesis from MRI Using Joint Probability Distribution of Diffusion Model at Ultrahigh Fields
Xie Taofeng, Cao Chentao, Cui Zhuoxu, Li Fanshi, Wei Zidong, Zhu Yanjie, Li Ye, Liang Dong, Jin Qiyu, Chen Guoqing, Wang Haifeng
[16th Nov., 2022] [arXiv, 2022]
[Paper]
Conversion Between CT and MRI Images Using Diffusion and Score-Matching Models
Qing Lyu, Ge Wang
[24th Sep., 2022] [arXiv, 2022]
[Paper]
Unsupervised Medical Image Translation with Adversarial Diffusion Models
Muzaffer Özbey, Salman UH Dar, Hasan A Bedel, Onat Dalmaz, Şaban Özturk, Alper Güngör, Tolga Çukur
[17th Jul., 2022] [arXiv, 2022]
[Paper]
A Novel Unified Conditional Score-based Generative Framework for Multi-modal Medical Image Completion
Xiangxi Meng, Yuning Gu, Yongsheng Pan, Nizhuan Wang, Peng Xue, Mengkang Lu, Xuming He, Yiqiang Zhan, Dinggang Shen
[7th Jul., 2022] [arXiv, 2022]
[Paper]
Sub-volume-based Denoising Diffusion Probabilistic Model for Cone-beam CT Reconstruction from Incomplete Data
Wenjun Xia, Chuang Niu, Wenxiang Cong, Ge Wang
[22nd Mar., 2023] [arXiv, 2023]
[Paper]
Improving 3D Imaging with Pre-Trained Perpendicular 2D Diffusion Models
Suhyeon Lee, Hyungjin Chung, Minyoung Park, Jonghyuk Park, Wi-Sun Ryu, Jong Chul Ye
[15th Mar., 2023] [arXiv, 2023]
[Paper]
Fast Diffusion Sampler for Inverse Problems by Geometric Decomposition
Hyungjin Chung, Suhyeon Lee, Jong Chul Ye
[10th Mar., 2023] [arXiv, 2023]
[Paper]
Diffusion Denoising for Low-Dose-CT Model
Runyi Li
[27th Jan., 2023] [arXiv, 2023]
[Paper]
Annealed Score-Based Diffusion Model for MR Motion Artifact Reduction
Gyutaek Oh, Jeong Eun Lee, Jong Chul Ye
[8th Jan., 2023] [arXiv, 2023]
[Paper]
Universal Generative Modeling in Dual-domain for Dynamic MR Imaging
Chuanming Yu, Yu Guan, Ziwen Ke, Dong Liang, Qiegen Liu
[15th Dec., 2022] [arXiv, 2022]
[Paper]
SPIRiT-Diffusion: SPIRiT-driven Score-Based Generative Modeling for Vessel Wall imaging
Chentao Cao, Zhuo-Xu Cui, Jing Cheng, Sen Jia, Hairong Zheng, Dong Liang, Yanjie Zhu
[14th Dec., 2022] [arXiv, 2022]
[Paper]
One Sample Diffusion Model in Projection Domain for Low-Dose CT Imaging
Bin Huang, Liu Zhang, Shiyu Lu, Boyu Lin, Weiwen Wu, Qiegen Liu
[7th Dec., 2022] [arXiv, 2022]
[Paper]
DOLCE: A Model-Based Probabilistic Diffusion Framework for Limited-Angle CT Reconstruction
Jiaming Liu, Rushil Anirudh, Jayaraman J. Thiagarajan, Stewart He, K. Aditya Mohan, Ulugbek S. Kamilov, Hyojin Kim
[22nd Nov., 2022] [arXiv, 2022]
[Paper]
Solving 3D Inverse Problems using Pre-trained 2D Diffusion Models
Hyungjin Chung, Dohoon Ryu, Michael T. McCann, Marc L. Klasky, Jong Chul Ye
[19th Nov., 2022] [arXiv, 2022]
[Paper] [Github]
Patch-Based Denoising Diffusion Probabilistic Model for Sparse-View CT Reconstruction
Wenjun Xia, Wenxiang Cong, Ge Wang
[18th Nov., 2022] [arXiv, 2022]
[Paper]
Accelerated Motion Correction for MRI using Score-Based Generative Models
Brett Levac, Ajil Jalal, Jonathan I. Tamir
[1st Nov., 2022] [arXiv, 2022]
[Paper]
Self-Score: Self-Supervised Learning on Score-Based Models for MRI Reconstruction
Zhuo-Xu Cui, Chentao Cao, Shaonan Liu, Qingyong Zhu, Jing Cheng, Haifeng Wang, Yanjie Zhu, Dong Liang
[2nd Sep., 2022] [IEEE TMI, 2022]
[Paper]
One-shot Generative Prior in Hankel-k-space for Parallel Imaging Reconstruction
Hong Peng, Chen Jiang, Jing Cheng, Minghui Zhang, Shanshan Wang, Dong Liang, Qiegen Liu
[15th Aug., 2022] [arXiv, 2022]
[Paper] [Github]
High-Frequency Space Diffusion Models for Accelerated MRI
Chentao Cao, Zhuo-Xu Cui, Shaonan Liu, Dong Liang, Yanjie Zhu
[10th Aug., 2022] [arXiv, 2022]
[Paper]
Adaptive Diffusion Priors for Accelerated MRI Reconstruction
Salman UH Dar, Şaban Öztürk, Yilmaz Korkmaz, Gokberk Elmas, Muzaffer Özbey, Alper Güngör, Tolga Çukur
[12th Jul., 2022] [arXiv, 2022]
[Paper]
Improving Diffusion Models for Inverse Problems using Manifold Constraints
Hyungjin Chung, Byeongsu Sim, Dohoon Ryu, Jong Chul Ye
[2nd Jun., 2022] [NeurIPS, 2022]
[Paper]
WKGM: Weight-K-space Generative Model for Parallel Imaging Reconstruction
Zongjiang Tu, Die Liu, Xiaoqing Wang, Chen Jiang, Pengwen Zhu, Minghui Zhang, Shanshan Wang, Dong Liang, Qiegen Liu
[8th May, 2022] [arXiv, 2022]
[Paper] [Github]
Towards performant and reliable undersampled MR reconstruction via diffusion model sampling
Cheng Peng, Pengfei Guo, S. Kevin Zhou, Vishal Patel, Rama Chellappa
[8th Mar., 2022] [MICCAI, 2022]
[Paper] [Github]
Measurement-conditioned Denoising Diffusion Probabilistic Model for Under-sampled Medical Image Reconstruction
Yutong Xie, Quanzheng Li
[5th Mar., 2022] [MICCAI, 2022]
[Paper] [Github]
MRI Reconstruction via Data Driven Markov Chain with Joint Uncertainty Estimation
Guanxiong Luo, Martin Heide, Martin Uecker
[3rd Feb., 2022] [arXiv, 2022]
[Paper] [Github]
Come-Closer-Diffuse-Faster: Accelerating Conditional Diffusion Models for Inverse Problems through Stochastic Contraction
Hyungjin Chung, Byeongsu Sim, Jong Chul Ye
[9th Dec., 2021] [CVPR, 2021]
[Paper]
Solving Inverse Problems in Medical Imaging with Score-Based Generative Models
Yang Song, Liyue Shen, Lei Xing, Stefano Ermon
[15th Nov., 2021] [ICLR, 2022]
[Paper] [Github]
Score-based diffusion models for accelerated MRI
Hyungjin Chung, Jong chul Ye
[8th Oct., 2021] [MIA, 2021]
[Paper] [Github]
Robust Compressed Sensing MRI with Deep Generative Priors
Ajil Jalal, Marius Arvinte, Giannis Daras, Eric Price, Alexandros G. Dimakis, Jonathan I. Tamir
[3rd Aug., 2021] [NeurIPS, 2021]
[Paper] [Github]
Mask-conditioned latent diffusion for generating gastrointestinal polyp images
Roman Macháček, Leila Mozaffari, Zahra Sepasdar, Sravanthi Parasa, Pål Halvorsen, Michael A. Riegler, Vajira Thambawita
[11th Apr., 2023] [arXiv, 2023]
[Paper] [Github]
MedGen3D: A Deep Generative Framework for Paired 3D Image and Mask Generation
Kun Han, Yifeng Xiong, Chenyu You, Pooya Khosravi, Shanlin Sun, Xiangyi Yan, James Duncan, Xiaohui Xie
[8th Apr., 2023] [arXiv, 2023]
[Paper]
Towards Realistic Ultrasound Fetal Brain Imaging Synthesis
Michelle Iskandar, Harvey Mannering, Zhanxiang Sun, Jacqueline Matthew, Hamideh Kerdegari, Laura Peralta, Miguel Xochicale
[8th Apr., 2023] [arXiv, 2023]
[Paper] [Github]
2D Medical Image Synthesis Using Transformer-based Denoising Diffusion Probabilistic Model
Shaoyan Pan, Tonghe Wang, Richard L J Qiu, Marian Axente, Chih-Wei Chang, Junbo Peng, Ashish B Patel, Joseph Shelton, Sagar A Patel, Justin Roper
[4th Apr., 2023] [Physics in Medicine & Biology, 2023]
[Paper]
ViT-DAE: Transformer-driven Diffusion Autoencoder for Histopathology Image Analysis
Xuan Xu, Saarthak Kapse, Rajarsi Gupta, Prateek Prasanna
[3rd Apr., 2023] [arXiv, 2023]
[Paper]
DDMM-Synth: A Denoising Diffusion Model for Cross-modal Medical Image Synthesis with Sparse-view Measurement Embedding
Xiaoyue Li, Kai Shang, Gaoang Wang, Mark D. Butala
[28th Mar., 2023] [arXiv, 2023]
[Paper]
CoLa-Diff: Conditional Latent Diffusion Model for Multi-Modal MRI Synthesis
Lan Jiang, Ye Mao, Xi Chen, Xiangfeng Wang, Chao Li
[24th Mar., 2023] [arXiv, 2023]
[Paper]
Feature-Conditioned Cascaded Video Diffusion Models for Precise Echocardiogram Synthesis
Hadrien Reynaud, Mengyun Qiao, Mischa Dombrowski, Thomas Day, Reza Razavi, Alberto Gomez, Paul Leeson, Bernhard Kainz
[22nd Mar., 2023] [arXiv, 2023]
[Paper] [Github]
NASDM: Nuclei-Aware Semantic Histopathology Image Generation Using Diffusion Models
Aman Shrivastava, P. Thomas Fletcher
[20th Mar., 2023] [arXiv, 2023]
[Paper]
Cascaded Latent Diffusion Models for High-Resolution Chest X-ray Synthesis
Tobias Weber, Michael Ingrisch, Bernd Bischl, David Rügamer
[20th Mar., 2023] [arXiv, 2023]
[Paper]
Efficiently Training Vision Transformers on Structural MRI Scans for Alzheimer's Disease Detection
Nikhil J. Dhinagar, Sophia I. Thomopoulos, Emily Laltoo, Paul M. Thompson
[14th Mar., 2023] [arXiv, 2023]
[Paper]
DDFM: Denoising Diffusion Model for Multi-Modality Image Fusion
Zixiang Zhao, Haowen Bai, Yuanzhi Zhu, Jiangshe Zhang, Shuang Xu, Yulun Zhang, Kai Zhang, Deyu Meng, Radu Timofte, Luc Van Gool
[13th Mar., 2023] [arXiv, 2023]
[Paper]
Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion
Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu
[3rd Mar., 2023] [arXiv, 2023]
[Paper]
Denoising Diffusion Probabilistic Models for Generation of Realistic Fully-Annotated Microscopy Image Data Sets
Dennis Eschweiler, Johannes Stegmaier
[2nd Jan., 2023] [arXiv, 2023]
[Paper] [Github] [Synthetic Dataset]
Conversion of the Mayo LDCT Data to Synthetic Equivalent through the Diffusion Model for Training Denoising Networks with a Theoretically Perfect Privacy
Yongyi Shi, Ge Wang
[16th Jan., 2023] [arXiv, 2023]
[Paper]
Generating Realistic 3D Brain MRIs Using a Conditional Diffusion Probabilistic Model
Wei Peng, Ehsan Adeli, Qingyu Zhao, Kilian M Pohl
[15th Dec., 2022] [arXiv, 2022]
[Paper]
SADM: Sequence-Aware Diffusion Model for Longitudinal Medical Image Generation
Jee Seok Yoon, Chenghao Zhang, Heung-Il Suk, Jia Guo, Xiaoxiao Li
[16th Dec., 2022] [arXiv, 2022]
[Paper]
Diffusion Probabilistic Models beat GANs on Medical Images
Gustav Müller-Franzes, Jan Moritz Niehues, Firas Khader, Soroosh Tayebi Arasteh, Christoph Haarburger, Christiane Kuhl, Tianci Wang, Tianyu Han, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
[14th Dec., 2022] [arXiv, 2022]
[Paper]
Improving dermatology classifiers across populations using images generated by large diffusion models
Luke W. Sagers, James A. Diao, Matthew Groh, Pranav Rajpurkar, Adewole S. Adamson, Arjun K. Manrai
[23rd Nov., 2022] [NeurIPS Workshop, 2022]
[Paper]
Seeing Beyond the Brain: Conditional Diffusion Model with Sparse Masked Modeling for Vision Decoding
Zijiao Chen, Jiaxin Qing, Tiange Xiang, Wan Lin Yue, Juan Helen Zhou
[13th Nov., 2022] [arXiv, 2022]
[Paper]
An unobtrusive quality supervision approach for medical image annotation
Sonja Kunzmann, Mathias Öttl, Prathmesh Madhu, Felix Denzinger, Andreas Maier
[11th Nov., 2022] [arXiv, 2022]
[Paper]
Medical Diffusion: Denoising Diffusion Probabilistic Models for 3D Medical Image Generation
Firas Khader, Gustav Mueller-Franzes, Soroosh Tayebi Arasteh, Tianyu Han, Christoph Haarburger, Maximilian Schulze-Hagen, Philipp Schad, Sandy Engelhardt, Bettina Baessler, Sebastian Foersch, Johannes Stegmaier, Christiane Kuhl, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
[7th Nov., 2022] [arXiv, 2022]
[Paper] [Github]
Generation of Anonymous Chest Radiographs Using Latent Diffusion Models for Training Thoracic Abnormality Classification Systems
Kai Packhäuser, Lukas Folle, Florian Thamm, Andreas Maier
[2nd Nov., 2022] [arXiv, 2022]
[Paper]
Spot the fake lungs: Generating Synthetic Medical Images using Neural Diffusion Models
Hazrat Ali, Shafaq Murad, Zubair Shah
[2nd Nov., 2022] [arXiv, 2022]
[Paper]
A Morphology Focused Diffusion Probabilistic Model for Synthesis of Histopathology Images
Puria Azadi Moghadam, Sanne Van Dalen, Karina C. Martin, Jochen Lennerz, Stephen Yip, Hossein Farahani, Ali Bashashati
[27th Sep., 2022] [arXiv, 2022]
[Paper]
Brain Imaging Generation with Latent Diffusion Models
Walter H. L. Pinaya, Petru-Daniel Tudosiu, Jessica Dafflon, Pedro F da Costa, Virginia Fernandez, Parashkev Nachev, Sebastien Ourselin, M. Jorge Cardoso
[15th Sep., 2022] [MICCAI Workshop, 2022]
[Paper]
A Diffusion Model Predicts 3D Shapes from 2D Microscopy Images
Dominik J. E. Waibel, Ernst Röell, Bastian Rieck, Raja Giryes, Carsten Marr
[30th Aug., 2022] [arXiv, 2022]
[Paper] [Github]
Diffusion Deformable Model for 4D Temporal Medical Image Generation
Boah Kim, Jong Chul Ye
[27th Jan., 2022] [MICCAI, 2022]
[Paper] [Github]
Three-Dimensional Medical Image Synthesis with Denoising Diffusion Probabilistic Models
Zolnamar Dorjsembe, Sodtavilan Odonchimed, Furen Xiao
[22nd Apr., 2022] [MIDL, 2022]
[Paper] [Github]
Protein Sequence and Structure Co-Design with Equivariant Translation
Chence Shi, Chuanrui Wang, Jiarui Lu, Bozitao Zhong, Jian Tang
[17th Oct., 2022] [arXiv, 2022]
[Paper]
Equivariant 3D-Conditional Diffusion Models for Molecular Linker Design
Ilia Igashov, Hannes Stärk, Clément Vignac, Victor Garcia Satorras, Pascal Frossard, Max Welling, Michael Bronstein, Bruno Correia
[11th Oct., 2022] [arXiv, 2022]
[Paper] [Github]
Dynamic-Backbone Protein-Ligand Structure Prediction with Multiscale Generative Diffusion Models
Zhuoran Qiao, Weili Nie, Arash Vahdat, Thomas F. Miller III, Anima Anandkumar
[30th Sep., 2022] [arXiv, 2022]
[Paper]
Equivariant Energy-Guided SDE for Inverse Molecular Design
Fan Bao, Min Zhao, Zhongkai Hao, Peiyao Li, Chongxuan Li, Jun Zhu
[30th Sep., 2022] [arXiv, 2022]
[Paper]
Protein structure generation via folding diffusion
Kevin E. Wu, Kevin K. Yang, Rianne van den Berg, James Y. Zou, Alex X. Lu, Ava P. Amini
[30th Sep., 2022] [arXiv, 2022]
[Paper]
MDM: Molecular Diffusion Model for 3D Molecule Generation
Lei Huang, Hengtong Zhang, Tingyang Xu, Ka-Chun Wong
[13th Sep., 2022] [arXiv, 2022]
[Paper]
Diffusion-based Molecule Generation with Informative Prior Bridges
Lemeng Wu, Chengyue Gong, Xingchao Liu, Mao Ye, Qiang Liu
[2nd Sep., 2022] [NeurIPS, 2022]
[Paper]
Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models
Shitong Luo, Yufeng Su, Xingang Peng, Sheng Wang, Jian Peng, Jianzhu Ma
[11th Jul., 2022] [BioRXiv, 2022]
[Paper]
Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem
Brian L. Trippe, Jason Yim, Doug Tischer, Tamara Broderick, David Baker, Regina Barzilay, Tommi Jaakkola
[8th Jun., 2022] [ICLR, 2023]
[Paper]
Torsional Diffusion for Molecular Conformer Generation
Bowen Jing, Gabriele Corso, Regina Barzilay, Tommi S. Jaakkola
[1st Jun., 2022] [ICLR Workshop, 2022]
[Paper] [Github]
Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models
Namrata Anand, Tudor Achim
[26th May, 2022] [arXiv, 2022]
[Paper] [Github] [Project]
A Score-based Geometric Model for Molecular Dynamics Simulations
Fang Wu, Qiang Zhang, Xurui Jin, Yinghui Jiang, Stan Z. Li
[19th Apr., 2022] [CoRR, 2022]
CoRR 2022. [Paper]
Equivariant Diffusion for Molecule Generation in 3D
Emiel Hoogeboom, Victor Garcia Satorras, Clément Vignac, Max Welling
[31st Mar., 2022] [ICML, 2022]
[Paper] [Github]
GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation
Minkai Xu, Lantao Yu, Yang Song, Chence Shi, Stefano Ermon, Jian Tang
[6th Mar., 2022] [ICLR, 2022]
[Paper] [Github]
Crystal Diffusion Variational Autoencoder for Periodic Material Generation
Tian Xie, Xiang Fu, Octavian-Eugen Ganea, Regina Barzilay, Tommi Jaakkola
[12th Oct., 2021] [NeurIPS, 2021]
[Paper] [Github]
Predicting Molecular Conformation via Dynamic Graph Score Matching
Shitong Luo, Chence Shi, Minkai Xu, Jian Tang
[22th May, 2021] [NeurIPS, 2021]
[Paper]
DiffuseMorph: Unsupervised Deformable Image Registration Along Continuous Trajectory Using Diffusion Models
Boah Kim, Inhwa Han, Jong Chul Ye
[9th Dec., 2021] [ECCV, 2022]
[Paper]
Multitask Brain Tumor Inpainting with Diffusion Models: A Methodological Report
Pouria Rouzrokh, Bardia Khosravi, Shahriar Faghani, Mana Moassefi, Sanaz Vahdati, Bradley J. Erickson
[21st Oct., 2022] [arXiv, 2022]
[Paper] [Github] [Online Tool]
DiffMIC: Dual-Guidance Diffusion Network for Medical Image Classification
Yijun Yang, Huazhu Fu, Angelica I. Aviles-Rivero, Carola-Bibiane Schönlieb, Lei Zhu
[19th Mar., 2023] [arXiv, 2023]
[Paper] [Github]
Diffusion-Based Hierarchical Multi-Label Object Detection to Analyze Panoramic Dental X-rays
Ibrahim Ethem Hamamci, Sezgin Er, Enis Simsar, Anjany Sekuboyina, Mustafa Gundogar, Bernd Stadlinger, Albert Mehl, Bjoern Menze
[11th Mar., 2023] [arXiv, 2023]
[Paper] [Github]
Fight Fire With Fire: Reversing Skin Adversarial Examples by Multiscale Diffusive and Denoising Aggregation Mechanism
Yongwei Wang, Yuan Li, Zhiqi Shen
[22nd Aug., 2022] [arXiv, 2022]
[Paper]
Pay Attention: Accuracy Versus Interpretability Trade-off in Fine-tuned Diffusion Models
Mischa Dombrowski, Hadrien Reynaud, Johanna P. Müller, Matthew Baugh, Bernhard Kainz
[31st Mar., 2023] [arXiv, 2023]
[Paper] [Github]
Medical diffusion on a budget: textual inversion for medical image generation
Bram de Wilde, Anindo Saha, Richard P.G. ten Broek, Henkjan Huisman
[23rd Mar., 2023] [arXiv, 2023]
[Paper]
Diffusion-based Data Augmentation for Skin Disease Classification: Impact Across Original Medical Datasets to Fully Synthetic Images
Mohamed Akrout, Bálint Gyepesi, Péter Holló, Adrienn Poór, Blága Kincső, Stephen Solis, Katrina Cirone, Jeremy Kawahara, Dekker Slade, Latif Abid, Máté Kovács, István Fazekas
[12th Jan., 2023] [arXiv, 2023]
[Paper]
RoentGen: Vision-Language Foundation Model for Chest X-ray Generation
Pierre Chambon, Christian Bluethgen, Jean-Benoit Delbrouck, Rogier Van der Sluijs, Małgorzata Połacin, Juan Manuel Zambrano Chaves, Tanishq Mathew Abraham, Shivanshu Purohit, Curtis P. Langlotz, Akshay Chaudhari
[23rd Nov., 2022] [arXiv, 2022]
[Paper]
Adapting Pretrained Vision-Language Foundational Models to Medical Imaging Domains
Pierre Chambon, Christian Bluethgen, Curtis P. Langlotz, Akshay Chaudhari
[9th Oct., 2022] [arXiv, 2022]
[Paper]
Restoration of Time-Series Medical Data with Diffusion Model
Jiwoon Lee, Cheolsoo Park
[6th Oct., 2022] [ICCE-Asia, 2022]
[Paper]
Anatomically constrained CT image translation for heterogeneous blood vessel segmentation
Giammarco La Barbera, Haithem Boussaid, Francesco Maso, Sabine Sarnacki, Laurence Rouet, Pietro Gori, Isabelle Bloch
[4th Oct., 2022] [BMVC, 2022]
[Paper]
Fast Unsupervised Brain Anomaly Detection and Segmentation with Diffusion Models
Walter H. L. Pinaya, Mark S. Graham, Robert Gray, Pedro F Da Costa, Petru-Daniel Tudosiu, Paul Wright, Yee H. Mah, Andrew D. MacKinnon, James T. Teo, Rolf Jager, David Werring, Geraint Rees, Parashkev Nachev, Sebastien Ourselin, M. Jorge Cardos
[7th Jun., 2022] [MICCAI, 2022]
[Paper]
MR Image Denoising and Super-Resolution Using Regularized Reverse Diffusion
Hyungjin Chung, Eun Sun Lee, Jong Chul Ye
[23rd Mar., 2022] [IEEE TMI, 2022]
[Paper]
DisC-Diff: Disentangled Conditional Diffusion Model for Multi-Contrast MRI Super-Resolution
Ye Mao, Lan Jiang, Xi Chen, Chao Li
[24th Mar., 2023] [arXiv, 2023]
[Paper]
Semantic Latent Space Regression of Diffusion Autoencoders for Vertebral Fracture Grading
Matthias Keicher, Matan Atad, David Schinz, Alexandra S. Gersing, Sarah C. Foreman, Sophia S. Goller, Juergen Weissinger, Jon Rischewski, Anna-Sophia Dietrich, Benedikt Wiestler, Jan S. Kirschke, Nassir Navab
[21st Mar., 2023] [arXiv, 2023]
[Paper]
AugDiff: Diffusion based Feature Augmentation for Multiple Instance Learning in Whole Slide Image
Zhuchen Shao, Liuxi Dai, Yifeng Wang, Haoqian Wang, Yongbing Zhang
[11th Mar., 2023] [arXiv, 2023]
[Paper]
Brain Diffuser: An End-to-End Brain Image to Brain Network Pipeline
Xuhang Chen, Baiying Lei, Chi-Man Pun, Shuqiang Wang
[11th Mar., 2023] [arXiv, 2023]
[Paper]
Learning Enhancement From Degradation: A Diffusion Model For Fundus Image Enhancement
Puijin Cheng, Li Lin, Yijin Huang, Huaqing He, Wenhan Luo, Xiaoying Tang
[8th Mar., 2023][arXiv, 2023]
[Paper]
DiffusionCT: Latent Diffusion Model for CT Image Standardization
Md Selim, Jie Zhang, Michael A. Brooks, Ge Wang, Jin Chen
[20th Jan., 2023] [arXiv, 2023]
[Paper]
Diffusion Model based Semi-supervised Learning on Brain Hemorrhage Images for Efficient Midline Shift Quantification
Shizhan Gong, Cheng Chen, Yuqi Gong, Nga Yan Chan, Wenao Ma, Calvin Hoi-Kwan Mak, Jill Abrigo, Qi Dou
[1st Jan., 2023] [arXiv, 2023]
[Paper]