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xiongyanshi

xiongyanshi

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Location:shanghai,China

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xiongyanshi's starred repositories

Python

All Algorithms implemented in Python

Language:PythonLicense:MITStargazers:182572Issues:5938Issues:1454

weekly

科技爱好者周刊，每周五发布

Stargazers:43728Issues:2100Issues:4692

C-Plus-Plus

Collection of various algorithms in mathematics, machine learning, computer science and physics implemented in C++ for educational purposes.

Language:C++License:MITStargazers:29725Issues:515Issues:286

CS-Books

🔥🔥超过1000本的计算机经典书籍、个人笔记资料以及本人在各平台发表文章中所涉及的资源等。书籍资源包括C/C++、Java、Python、Go语言、数据结构与算法、操作系统、后端架构、计算机系统知识、数据库、计算机网络、设计模式、前端、汇编以及校招社招各种面经~

Stargazers:19836Issues:189Issues:26

flasky

Companion code to my O'Reilly book "Flask Web Development", second edition.

Language:PythonLicense:MITStargazers:8490Issues:407Issues:490

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

Stargazers:3016Issues:168Issues:10

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

Language:JavaScriptLicense:GPL-3.0Stargazers:1189Issues:37Issues:1548

aquar-home

高度可定制的个人Home页，同时是强大的NAS服务控制台。

Language:VueLicense:LGPL-3.0Stargazers:781Issues:10Issues:19

spades

SPAdes Genome Assembler

Language:C++License:NOASSERTIONStargazers:723Issues:32Issues:1118

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

License:MITStargazers:610Issues:36Issues:1

cbioportal

cBioPortal for Cancer Genomics

Language:JavaLicense:AGPL-3.0Stargazers:584Issues:52Issues:6033

mummer

Mummer alignment tool

Language:C++License:Artistic-2.0Stargazers:438Issues:21Issues:199

The-C-Book

Stargazers:364Issues:6Issues:0

awesome-vdj

📚 Tools and databases for analyzing HLA and VDJ genes.

License:CC0-1.0Stargazers:194Issues:14Issues:2

SOAPnuke

A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files

Language:C++License:GPL-3.0Stargazers:98Issues:10Issues:40

tcr-dist

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

Language:PythonLicense:MITStargazers:79Issues:14Issues:28

BamDeal

BamDeal: a comprehensive toolkit for bam manipulation

Language:C++License:MITStargazers:52Issues:4Issues:3

tcrdist3

flexible CDR based distance metrics

Language:PythonLicense:MITStargazers:52Issues:6Issues:57

DNBelab_C_Series_HT_scRNA-analysis-software

An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets

License:MITStargazers:52Issues:1Issues:59

Clinker

Gene Fusion Visualiser

Language:PythonLicense:MITStargazers:50Issues:7Issues:29

bein

Miniature LIMS and workflow manager for bioinformatics

Language:PythonLicense:GPL-3.0Stargazers:41Issues:7Issues:18

VarBen

Language:PythonLicense:MITStargazers:33Issues:0Issues:0

limbus

LImBuS is an open source, standards compliant Biobank Information Management System developed by researchers from Aberystwyth University.

Language:PythonLicense:GPL-3.0Stargazers:29Issues:5Issues:137

SGE-On-CentOS

Intro how to install and use SGE(Sun Grid Engine) on ConteOS 7

Stargazers:19Issues:2Issues:2

uvc

UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)

Language:C++License:BSD-3-ClauseStargazers:13Issues:0Issues:0

citup

Clonality Inference in Multiple Tumor Samples using Phylogeny

Language:C++Stargazers:13Issues:0Issues:0

IMPre

Predict BCR/TCR Germline Genes and Alleles

Language:CLicense:NOASSERTIONStargazers:6Issues:2Issues:0

gatk3.8.0

GATK3.8.0 downloadable with git clone

Stargazers:3Issues:1Issues:0

ESCC-code

Language:RStargazers:3Issues:0Issues:0

readfq

Fast multi-line FASTA/Q reader in several programming languages

Language:CStargazers:1Issues:1Issues:0