xinhe-lab

ctwas

package for the causal TWAS project

GSFA

R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

aFib_heart_atlas_mapgen_paper

Code and data resources for aFib heart atlas paper

ctwas-paper

Code related to analysis in the ctwas paper.

lab-wiki

Repository for documenting lab best practices

mapgen

R package to perform gene mapping using functionally-informed genetic fine mapping

GSFA_paper

Analysis code for the GSFA manuscript "A novel Bayesian factor analysis method improves detection of genes and biological processes affected by perturbations in single-cell CRISPR screening"

m6A-ASE

mirage

Mixture model based Rare variant Analysis on Genes

RSSp

Polygenic RSS

fusion_twas

methods for functional summary-based imputation

heart_atlas

heart atlas analysis in R

ldsc

LD Score Regression (LDSC)

sos-dockerfile-action

github action for runing SOS

UK_Biobank_GWAS

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

multigroup_ctwas

multigroup version of cTWAS package

singlegroup_ctwas

package for the causal TWAS project