xing-lab-pitt / livecellx

Repository from Github https://github.comxing-lab-pitt/livecellx

xing-lab-pitt/livecellx Issues

[UI] LivecellX is currently not compatible with Napari >= 0.5.0
Updated 5 months ago
Optimizing the process of generating single-cell contour masks
Updated 6 months ago1
[Napari UI] create interface: NoneType is not iterable
Updated 7 months ago
[Napari UI] support time is not 0-based index (starting from zero)
Updated 7 months ago1
[Napari UI update] Allowing users to connect the trajectories with overlap timespan and without time point overlap
Updated 8 months ago
SctOperator: after adding a new single cell, napari Shapes cannot load text's track_id
Updated 8 months ago1
[SC i/o] when saving SCTC, automatically filter sctc empty trajectoryes and empty single cells with empty contours.
Closed 8 months ago1
SCT length == 0 case: fail to start napari; fail to print sctc; because of lack of timeframe set in SCT
Updated 8 months ago
UI: show mother daughter IDs in cells
Updated 9 months ago
UI: connect/disconnect and load -> mother/daughter cell info not updated
Updated 9 months ago
Parallelize bug: multiprocessing issue on Windows/Mac; Ubuntu works fine
Updated a year ago
SctOperator: daughter/mother relation after connecting/disconnecting
Updated a year ago
Kernal crashed after running napari(sct_opeartor) on Ubuntu 20.04.6 LTS.
Updated a year ago
SctOperator: add show to revert hide operation from sct operator widget (top bar hide button)
Updated a year ago
SctOperator: Add a button to allow users to save annotation via UI
Updated a year ago1
labelme2coco bug and unnitest
Updated a year ago
py3.8 support issues
Updated a year ago
VisPy triangulation in older versions bug
Updated a year ago1
Mitosis detection data prep: float infinity bug
Updated a year ago1
SctOperator: selected_scs
Updated a year ago
SctOperator: save annotation outputs should not contain SingleImageDataset datasets
Updated a year ago
SctOperator: deletion + restore operation
Updated a year ago
SctOperator: add new single cell
Updated a year ago
Check: CI failure caused by an OpenCV bug mentioned in open-cv repo
Updated a year ago
Fix bug: napari add_shapes complain when the input shapes is an empty array
Updated a year ago
Fix bug: map color issue during creating sct operator by interval caused by track ID from UUID
Closed a year ago1
SctOperator: change sc id to not editable
Updated 2 years ago
Bug: find_opencv sometimes return multiple contours for label masks from cellpose
Updated 2 years ago1
Trajectory Analysis: add activate shape contour
Updated 2 years ago
Napari Panel - ScSegmentOperator: add UI to show SingleCellStatic attributes
Updated 2 years ago