Xindi Guo's repositories
docker-baseqDrops
Dockerization of baseqDrops
aacr_interactome
AACR Interactome
challengeutils
Synapse challenge utility functions
cvat
Computer Vision Annotation Tool (CVAT) is a web-based tool which helps to annotate video and images for Computer Vision algorithms
d3-hierarchy
2D layout algorithms for visualizing hierarchical data.
garnett
Automated cell type classification
genie-bpc-quac-wrapper
Wrapper for the GENIE BPC Quality Assurance Checklist for monitoring and notifications
genie-project-requests
Stand-alone scripts for quick checks or tasks for GENIE
GENIE-Sponsored-Projects
This repository contains processing code for GENIE sponsored projects used for creating cBioPortal files
genie_requests
Scripts for quick checks for GENIE
NTAP
This repository contains various analyses performed for the Neurofibromatosis Therapeutics Acceleration Program (NTAP).
PSON
Physical Sciences Oncology Network
pythonSynapseUtils
Helper Scripts to ease routine synapse python client oriented tasks
sandbox-infra
Automation for the Sage AWS org-sagebase-sandbox account
sandbox-provisioner
An service to auto provision resources on AWS scicomp
scicomp-provisioner
An service to auto provision resources
scRNAseq_Benchmark
Bench-marking classification tools for scRNA-seq data
single-cell-seq
For all things related to single cell sequencing
single-cell-seq-cwl
Tools and workflows for single cell RNAseq
synapse-workflow-cwl-tools
CWL tools for wrapping other tools with Synapse download and upload steps.
synapseAnnotations
Sage Bionetworks derived standards for annotating content in Synapse.
synapsePythonClient
Programmatic interface to Synapse services for Python