xiaoyezao's repositories
SynNet-Py
An adapted SynNet-Pipeline from https://github.com/zhaotao1987/SynNet-Pipeline
GENESPACE
genespace from jtlovell/GENESPACE
SIBBiodiversityBioinformatics2023
course for OMA phylogenomics
odp
oxford dot plots
PHYRN
Phylogenetic Reconstruction in the "Twilight-Zone" of Sequence Similarity
SubPhaser
Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.
SynNet-Pipeline
Workflow for Building Microsynteny Networks
rust-mdbg
minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
TAPER
Removing misaligned regions
Pollination_networks
R scripts and data for Doré et al., 2020 - Relative effects of anthropogenic pressures, climate, and sampling design on the structure of pollination networks at the global scale.
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
MCScanX
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
ratite-genomics
Scripts and other material for the assembly and analysis of ratite genomes.
Bioinformatics-Training
Bioinformatics training resources
bioruby-maf
MAF parser for BioRuby