xiangyupan

Xiangyu Pan's repositories

Comparative_genome

Language:Python700

CNEReg

Language:RGPL-3.06 10

phylogenetic-analysis-and-demographic-history-reconstruction

Language:Perl6 2 1

metagenomics_basic

Basic analysis of metagenomics from assembly to gene abundance

Language:PythonGPL-3.03 10

Python-100-Days

Python - 100天从新手到大师

Language:Jupyter Notebook300

lastz

Program for aligning DNA sequences, a pairwise aligner.

Language:CMIT2 10

ATAC-seq

Pipeline of analysing ATAC-seq data

GPL-3.0100

CNVcaller

Language:PerlGPL-3.0100

genome_analysis

Language:R100

phast

PHAST

Language:CNOASSERTION1 10

RNA-seq

A pipeline records the scripts and command lines for analyzing RNA-seq data for private.

Language:PythonGPL-3.01 10

Rumen_manuscript

Code and software list for "Tracing the origin of a new organ by inferring the genetic basis of rumen evolution"

Language:Jupyter NotebookGPL-3.01 10

cactus

Official home of genome aligner based upon notion of Cactus graphs

Language:CNOASSERTION000

flybspider

000

gat

Genomic Association Tester

Language:Python000

GeneLossPipe

Language:PerlMIT000

idr

IDR

Language:PythonGPL-2.0000

kentUtils

UCSC command line bioinformatic utilities

Language:C000

MACS

MACS -- Model-based Analysis of ChIP-Seq

Language:PythonNOASSERTION000

Metagenome

Pipeline of analysing metagenomic data-beta

GPL-3.0000

multiz

A strip-down version of multiz-tba

Language:C010

pathongs

Pathogen NGS Documentary

000

PhD_Graduate

Supplementary tables for PhD thesis

GPL-3.0010

snDrop_prep

Dropseq QC Pipeline

Language:Shell000

SuppData_Metazoa_2017

Alignments, supermatrices and trees from Simion & Philippe et al. 2017

000

TAI_axolotl

Codes for manuscript of "Transcriptome age analysis embryo development and regeneration in axolotl"

Language:PythonGPL-3.0010