Max Xiaohang Zhao's repositories
YabaiIndicator
MacOS Menubar Applet for showing spaces and switching spaces easily
python-baserow-simple
Simple baserow interface for retrieving and submitting data to a baserow database.
Configurations
Config files for various programs for more portability
python-word-filler
Fill Word documents with proper data separation using MS Office native functionality.
alpha-missense-server
Extremely simple server exposing alpha-missense scores as a web API
cosmis
COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently maps the landscape of 3D mutational constraint on 6.1 amino acid sites covering >80% (16,533) of human proteins.
cubi-tk
CUBI Tooling for SODAR, VarFish et al.
flowcat-gating
Gating preprocessing in flowcat
genometools
GenomeTools genome analysis system.
liftover
Code for liftover.broadinstitute.org which makes it easier to look up genomic liftover coordinates for a variant, position, or interval.
masif-pymol-plugin
Repository containing fixed masif pymol plugin
medgen-exomag-transfer
Tool for Transfering Genome Information from Medgen into Exomag format
noodles
Bioinformatics I/O libraries in Rust
pangenie
Pangenome-based genome inference
python-baserow-client
Python client for Baserow.io
python-gdt
Implementation of Geräte-Daten-Transfer (GDT) as a Python library
reev-frontend-lib
Re-useable components from REEV
rongs-noodlehouse
Bistro website
snappy-pipeline
SNAPPY Nucleic Acid Processing in Python
sodar-server
SODAR: System for Omics Data Access and Retrieval
varfish-cli
VarFish REST API client (CLI + Python package)
varfish-server
VarFish: comprehensive DNA variant analysis for diagnostics and research
varpresent
Generate presentations on individual variants