xiahui625649

aozhangchina.github.io

My GitHub Site

FunGraph

A statistical protocol to reconstruct omnigenic multilayer interactome networks for complex traits

ASpli

BioC current release of ASpli

BLINK

CandiHap

Build haplotye and generate figures

CandiHap-1

A haplotype analysis toolkit for natural variation study.

FxaF1GS

GEMMA

Genome-wide Efficient Mixed Model Association

gemma2

Zhou & Stephens (2014) GEMMA multivariate linear mixed model

GenABEL

:exclamation: This is a read-only mirror of the CRAN R package repository. GenABEL — genome-wide SNP association analysis. Homepage: http://www.genabel.org, http://forum.genabel.org,<U+000a>http://genabel.r-forge.r-project.org/ Report bugs for this package: http://r-forge.r-project.org/tracker/?group_id=505

ggmsa

:traffic_light: Visualizing publication-quality multiple sequence alignment using ggplot2

GOVS

Genome optimization via virtual simulation

gwasQxE

IntAssoPlot

JWAS.jl

Julia for Whole-genome Analysis Software

LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

metan

Package for multi-environment trial analysis

OpSel.jl

Efficient optimal selection for tree breeding

OutcrossSeq

PAST

Pathway Association Study Tool (PAST)

pliman

Tools for Plant Image Analysis

predCrossVar

Complete set of functions for the prediction of additive and dominance genetic variances and co-variances among full-siblings, based on parents.

pyeasyga

A simple and easy-to-use implementation of a Genetic Algorithm library in Python

quack

A FASTQ quality assessment tool

rMVP

:postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

rtm-gwas

An innovative GWAS procedure for studies on germplasm population and plant breeding

snpReady

A tool to assist breeders in genomic analysis

StatsWithJuliaBook

TF_CollaborativeNet

vcf2phylip

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis