xguse

table_enforcer

Table Enforcer is my attempt to apply a sort of "test driven development" workflow to data cleaning and validation. A python package to facilitate the iterative process of developing and using schema-like representations of DataFrames in pandas for recoding and validating instances of these data.

snaketools

vimDDR

Improve your vim reflexes!

alignparse

Align sequences and then parse features.

anaconda-cloud-recipes

My repo for conda build recipes intended to be hosted by me on anaconda.org

bioconda-recipes

Conda recipes for the bioconda channel.

Boostnote

🚀 Boostnote is an open source note-taking app made for programmers just like you.

conda-recipes

build and test recipes for conda

cookiecutter-pypackage

Cookiecutter template for a Python package.

cookiecutter-python-cli

crunchers

A library that provides a set of helper functions etc that I tend to use a lot when crunching data with scikit-learn, pandas, et al.

db_tools

dms_variants

Analyze deep mutational scanning of barcoded variants.

easygv

Define nodes and edges in an excel file and graph-style attributes in a yaml file with inheritance.

erd_elf

fcsparser

a python parser for reading fcs files supprorting fcs 2.0, 3.0, 3.1

FlowCytometryTools

A python package for visualization and analysis of high-throughput flow cytometry data

gemini

a lightweight db framework for exploring genetic variation.

GEOparse

Python library to access Gene Expression Omnibus Database (GEO)

gus_work_notes

gvl_commandline_utilities

Scripts for users of GVL cloud instances. These scripts configure GVL servers as command line bioinformatics platforms.

holographer

Holographer copies a filesytem object to a storage location and creates in its place a symlinked decoy pointing to the stored target. Think of when you run out of HDD space and need to move things to free up space. Holographer moves your files but replaces them with a hologram to appease your system.

logzero

Robust and effective logging for Python 2 and 3.

pansim

An effort to develop my abilities with regard to simulating complex systems and extracting useful insights from the simulations.

petrinet_explore

RunRed

This takes Registry Data and breaks it up into unique event based dataframes

samr_proteomics

wlog

XKCD-password-generator

Generate secure multiword passwords/passphrases, inspired by XKCD

zshrc

Base and custom .zshrc files