xflicsu

swDMR

A Sliding Window Approach to Identify Differentially Methylated Regions Based on Whole Genome Bisulfite Sequencing

HiC_tools

A collection of tools for Hi-C data analysis

academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

ATAC-seq

Basic workflow for ATAC-seq analysis

BarrettsProgressionRisk

Process and predict risk of adenocarcinoma progression from shallow whole-genome sequencing data.

CALDER

CellChat

R toolkit for inference and analysis of cell-cell communication from single-cell data

CHOIR

CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)

Circle_finder

Micro DNA identification

colon-dna-topology

COVID-19-RNA-Seq-datasets

A repository for sharing information on available COVID-19 RNA-Seq datasets

DNBelab_C_Series_HT_scRNA-analysis-software

An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets

ESD

Genomic variations of multi-grade esophageal squamous dysplasia

gpt_academic

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

HiTea

computational tool to identify trasposable element insertions using Hi-C data

human-atac

Code for demultiplexing and cell barcode assignment for sci-ATAC3 runs

hyperclust

lungATAC_analysis_code

MosaicForecast

A mosaic detecting software based on phasing and random forest

Nuc-PF

Codes of Dynamic nucleosome landscape elicits a novel noncanonical GATA2 pioneer model

parallel-fastq-dump

parallel fastq-dump wrapper

PReLIM

Python package for imputing missing CpG methylation data at the read level

RADAR

RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

seatac

SequencingCancerFinder

Sierra

Discover differential transcript usage from polyA-captured single cell RNA-seq data

split-seq-pipeline

TF-COMB

Transcription Factor Co-Occurrence using Market Basket analysis

WSHScripts

A collection of scripts for the calculation of Intra-Sample Heterogeneity Scores including FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL.