xander-p

bioicons

A library of free open source icons for science illustrations in biology and chemistry

bsfR

An R library to manage day-to-day analysis of next generation sequencing (NGS) data by the Biomedical Sequencing Facility (BSF).

DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

marsilea

Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

scidataflow

Command line scientific data management tool

DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

VFU

Streamlined version of VirtualFlow combining both VFVS and VFLP

training-material

A collection of Galaxy-related training material

virtual-screening

Virtual screening tools and Squonk2 jobs

drug-sniffer

Sniffing out new drugs

radipop_scripts

Scripts to train and validate random forest model for HVPG prediction

obsidian-bulk-rename

bioinf_posibnyk_public

AFFiNE

There can be more than Notion and Miro. AFFiNE(pronounced [ə‘fain]) is a next-gen knowledge base that brings planning, sorting and creating all together. Privacy first, open-source, customizable and ready to use.

awesome-ukrainian-omics-words

teachopencadd

TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data

jupyterlab-horizon-theme

VSCode Horizon Theme port for JupyterLab

scrnaseq_processing_seurat

A Snakemake workflow for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.

dea_seurat

A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

enrichment_analysis

A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

d2

D2 is a modern diagram scripting language that turns text to diagrams.

HVPG16

EthSEQ

Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data

atacseq_pipeline

Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.

single_cell_transcritpomics_roadmap