Won Cheol Yim's repositories
AgentGPT
🤖 Assemble, configure, and deploy autonomous AI Agents in your browser.
Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
chromap
Fast alignment and preprocessing of chromatin profiles
deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
doe-proposal-latex-template
A LaTeX template for proposals to the U.S. Department of Energy
DRAGMAP
DRAGEN open-source mapper
EDTA
Extensive de-novo TE Annotator
GALBA
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from a closely related species are available.
Helixer
Using Deep Learning to predict gene annotations
ibis_server_commands
Helpful commands to play with SLURM on manitou, superdome, valeria...
MarpoDB
An open registry of Marchantia polymorpha genetic parts
mm2-fast
A versatile pairwise aligner for genomic and spliced nucleotide sequences
NC_Timecourse
Collaboration between Austin and Debbie
pilon_iterative
Run pilon until it converges
PLANEX2-Bioinformatics-Workshops
Workshops presented by the Gladstone Bioinformatics Core
smk-simple-slurm
A simple Snakemake profile for Slurm without --cluster-config
snakemake-class
Class materials for the NIH HPC snakemake class
STRS_Single_cell
Suite of analysis tools for spatial total RNA-sequencing