27-28 April 2022 - University of São Paulo
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3D RNA-seq sample data for 28 April: https://www.dropbox.com/scl/fo/cj5t5g1q5ya3ye0ge7ahu/h?dl=0&rlkey=env336qvvbcdhvxlukxmcqiul
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Full example data for hand-on sessions: https://www.dropbox.com/s/8fsceneq8jlegwi/3D_RNAseq_example_data.zip?dl=0
Click “Download” and unzip, you will get three datasets:
- Galaxy_example_data: example data for transcript quantification using Galaxy
- Arabidopsis_cold: example data for 3D RNA-seq analysis
- Embryonic_mice: example data for homework and practice
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3D RNA-seq App user manual: https://github.com/wyguo/ThreeDRNAseq/tree/master/vignettes/user_manuals
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Galaxy Europe link: https://usegalaxy.eu/
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3D RNA-seq App link: https://ics.hutton.ac.uk/3drnaseq
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3D RNA-seq App Github page: https://github.com/wyguo/ThreeDRNAseq
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3D RNA-seq App YouTube video: https://www.youtube.com/watch?v=rqeXECX1-T4
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3D RNA-seq App publications:
- Guo W, Tzioutziou NA, Stephen G, Milne I, Calixto CPG, Waugh R, et al. 3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists. RNA Biol. 2020;00:1–14.
- Calixto CPG, Guo W, James AB, Tzioutziou NA, Entizne JC, Panter PE, et al. Rapid and dynamic alternative splicing impacts the arabidopsis cold response transcriptome. Plant Cell. 2018;30:1424–44.